Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01132 ATGGTGTCCCCCTCCCAAAGGATTCTGGTCACCGGTGGTGCCGGTTTCATAGGCACCCACACCGTCGTTCAACTCCTCAATGGAGGCTTCACTGTTTCAATAATCGACAATTTCGACAATTCCGTCATGGAAGCGGTCGACCGGGTACGTGAAGTTGTGGGTCCTCATCTGTCACAGAACCTAGAGTTCACCCAGGTCTGCACTTTCTCTCTCTTCCTTTTTCACTTCACTTTCCATATCGCAAATTCACTCCTCTTCTTATGGCAGGGCGATCTCAGGAATAGGGATGACTTGGAGAGACTCTTTTCTAGAACAACATTCGATGCTGTAATCCACTTTGCTGGCCTGAAGGCAGTTGCGGAAAGCGTGGCGAAGCCGCGTCGCTATTTTGATTTCAATTTGGTCGGCACCATCAATCTCTACGAAGTCATGGCCAAGTATAACTGTAAAAAGATGGTTTTTTCATCATCTGCTACCGTTTATGGCCAACCTGAAAAGATACCATGTGAGGAGGATTTCAAGTTGCAAGCTATGAATCCCTATGGACGGACCAAGCTTTTCCTTGAAGAAATTGCCCGAGATATTCAGAAAGCTGAGCCAGAATGGAAGATCATATTACTGAGATACTTCAATCCAGTTGGGGCTCATGAAAGTGGTAAACTCGGTGAAGATCCCAAGGGCATCCCGAATAATCTCATGCCTTACATTCAGCAAGTAGCTGTTGGAAGGTTGCCTGAACTCAATGTATACGGTCATGATTATCCAACAAGGGATGGCTCTGCGATCCGGGACTATATCCATGTGATGGACTTGGCTGATGGTCATATTGCTGCATTGAGAAAACTCTTCACATCGGAGAACATAGGTTGTACTGCTTATAACCTGGGAACTGGTCGTGGAACATCTGTGCTTGAAATGGTTGCAGCATTTGAAAAGGTTTCTGGCAAGAAAATTCCAGTAAAACTATGTCCAAGAAGACCAGGAGATGCTACGGAGGTTTATGCATCTACGCAGAGGGCTGAGAAAGAACTTGGTTGGAAGGCAAAATATGGTGTGGAGGAGATGTGCATGGACCAGTGGAATTGGGCAAAGAACAATCCCTGGGGTTACACGGGGAAGCCTTGA 1125 0.464 MVSPSQRILVTGGAGFIGTHTVVQLLNGGFTVSIIDNFDNSVMEAVDRVREVVGPHLSQNLEFTQVCTFSLFLFHFTFHIANSLLFLWQGDLRNRDDLERLFSRTTFDAVIHFAGLKAVAESVAKPRRYFDFNLVGTINLYEVMAKYNCKKMVFSSSATVYGQPEKIPCEEDFKLQAMNPYGRTKLFLEEIARDIQKAEPEWKIILLRYFNPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRLPELNVYGHDYPTRDGSAIRDYIHVMDLADGHIAALRKLFTSENIGCTAYNLGTGRGTSVLEMVAAFEKVSGKKIPVKLCPRRPGDATEVYASTQRAEKELGWKAKYGVEEMCMDQWNWAKNNPWGYTGKP 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01132 374 Pfam GDP-mannose 4,6 dehydratase 84 357 IPR016040 -
Spst3g01132 374 Pfam GDP-mannose 4,6 dehydratase 9 65 IPR016040 -
Spst3g01132 374 PANTHER UDP-GLUCOSE 4-EPIMERASE 5 371 - -
Spst3g01132 374 FunFam UDP-glucose 4-epimerase 4 306 374 - -
Spst3g01132 374 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 5 370 IPR036291 -
Spst3g01132 374 Gene3D - 8 303 - -
Spst3g01132 374 CDD UDP_G4E_1_SDR_e 7 364 IPR005886 GO:0003978|GO:0006012
Spst3g01132 374 Gene3D - 221 363 - -
Spst3g01132 374 NCBIfam UDP-glucose 4-epimerase GalE 85 367 IPR005886 GO:0003978|GO:0006012
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01132 Spst-Chr3 14649084 14651850 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01132 8 347 Miscellaneous Gene Families AT4G00110 26.966 5.45e-22 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01132 K01784 - gmx:100781806 669.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01132 3 14649084 14651850 Spst3g01132 3 14649084 14651850 ECH