Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04365 ATGGTCTCACCCTCCCAAAAGATTCTGGTAACCGGTGGTGCCGGTTTCATAGGCACCCACACCGTCGTGCAGCTCCTCAAAGGAGGCTTCACCGTTTCAATAATCGACAATTTTGACAACTCCGTCATGGAGGCGGTCGACCGGGTACGCCAAGTGGTGGGCCCTCATCTTTCTCAGAACCTCGAATTCACCCAGGGCGATCTCAGGAACAGGGATGACTTGGAGAGACTCTTCTCCAGAACCAAATTCGATGCCGTGATCCACTTTGCTGGCCTCAAAGCGGTTGCAGAAAGCGTGGTCAAGCCACGTCGTTATTTTGATTTCAATTTGATAGGCACCATCAATCTCTACGAAGTTATGGCCAAGTATAACTGTAAAAAGATGGTTTTTTCATCTTCTGCTACCGTTTATGGCCAACCTGAAAAGATACCCTGCGAGGAGGATTTCAAGTTGCAAGCTATGAATCCCTATGGACGGACCAAGCTTTTCCTTGAAGAAATTGCCCGAGATATTCAGAAAGCTGAGCCAGAATGGAAAATCATATTACTGAGATACTTCAATCCAGTTGGGGCTCATGAAAGTGGTCAACTCGGTGAAGATCCCAAGGGCATCCCGAATAATCTCATGCCTTACATTCAGCAAGTAGCTGTTGGAAGGCTGCCTGAACTCAATGTATACGGTCATGATTATCCAACTAGGGATGGCTCAGCGATCCGGGACTATATCCATGTGATGGACTTAGCAGATGGTCATATTGCTGCCTTGAGAAAGCTCTTTACATCGGAGAACATAGGTTGTACCGCTTACAACCTGGGAACCGGTCGTGGAACATCTGTGCTTGAAATGGTTGCAGCATTTGAAAAGGCTTCTGGCAAGAAAATTCCAGTAAAGTTATGTCCAAGAAGACCAGGAGATGCCACGGAGGTTTATGCATCTACACAGAGAGCTGAGACAGAACTTAGTTGGAAGGCAAAATATGGTGTGGAGGAGATGTGCAGGGACCAGTGGAATTGGGCAAAGAACAATCCCTGGGGTTACACGGGGAAGCCTTGA 1053 0.4748 MVSPSQKILVTGGAGFIGTHTVVQLLKGGFTVSIIDNFDNSVMEAVDRVRQVVGPHLSQNLEFTQGDLRNRDDLERLFSRTKFDAVIHFAGLKAVAESVVKPRRYFDFNLIGTINLYEVMAKYNCKKMVFSSSATVYGQPEKIPCEEDFKLQAMNPYGRTKLFLEEIARDIQKAEPEWKIILLRYFNPVGAHESGQLGEDPKGIPNNLMPYIQQVAVGRLPELNVYGHDYPTRDGSAIRDYIHVMDLADGHIAALRKLFTSENIGCTAYNLGTGRGTSVLEMVAAFEKASGKKIPVKLCPRRPGDATEVYASTQRAETELSWKAKYGVEEMCRDQWNWAKNNPWGYTGKP 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04365 350 CDD UDP_G4E_1_SDR_e 7 340 IPR005886 GO:0003978|GO:0006012
Vimu11g04365 350 PANTHER UDP-GLUCOSE 4-EPIMERASE 5 347 - -
Vimu11g04365 350 Gene3D - 197 339 - -
Vimu11g04365 350 FunFam UDP-glucose 4-epimerase 4 282 350 - -
Vimu11g04365 350 NCBIfam UDP-glucose 4-epimerase GalE 7 343 IPR005886 GO:0003978|GO:0006012
Vimu11g04365 350 FunFam UDP-glucose 4-epimerase 8 203 - -
Vimu11g04365 350 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 5 346 IPR036291 -
Vimu11g04365 350 Gene3D - 8 279 - -
Vimu11g04365 350 Pfam GDP-mannose 4,6 dehydratase 9 334 IPR016040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04365 Vimu-Chr11 64963368 64965921 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04365 8 338 Miscellaneous Gene Families AT4G00110 27.586 3.20e-22 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04365 K01784 - gmx:100781806 681.019
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04365 11 64963368 64965921 Vimu11g04365 11 64963368 64965921 ECH