Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu1g0431 . . . Aed6g1243 Aev07g1295 . . . . . . . . . . . . . . . . . Gma17g02117 Gma14g00949 Gso14g0902 Gso17g1880 . . . . . . . . . . . . . . . . . . . Phco2g00493 . . Pste8g00317 . . . Spst8g01858 Ssu5g0484 . . . . . . Vimu1g02741 . . Vra6g1666
Pvu1g0432 . . . Aed6g1242 . . . . . . . Apr9g0235 . . . . . . . . . . Gma17g02116 Gma14g00951 Gso14g0904 Gso17g1879 . . . . . . . . . . . . . . . . . . . Phco2g00494 . . Pste8g00315 . . . Spst8g01857 Ssu5g0485 . . . . . . . . . .
Pvu1g0433 . . . Aed6g1241 . . . . . . . . Arst10g02393 . . . . . . . . . Gma17g02115 Gma14g00952 Gso14g0905 Gso17g1878 . . . . . . . . . . . . . . . . . . . Phco2g00495 . Psa6g0575 Pste8g00309 . . . Spst8g01856 Ssu5g0486 . . . . . . Vimu1g02737 . . Vra6g1665
Pvu1g0434 . . . Aed6g1240 . . . . . . . . . . . . . . . . . . Gma17g02113 Gma14g00954 Gso14g0906 Gso17g1876 . . . . . . . . . . . . . . . . . . . Phco2g00496 . . Pste8g00303 . . . Spst8g01855 Ssu5g0488 . . . . . . Vimu1g02736 . . Vra6g1664
Pvu1g0435 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco2g00498 . . Pste8g00302 . . . . . . . . . . . Vimu1g02728 . . Vra6g1663
Pvu1g0436 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g0437 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco2g00500 . . . . . . Spst8g01854 . . . . . . . Vimu1g02725 . . Vra6g1662
Pvu1g0438 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco2g00502 . . . . . . . . . . . . . . Vimu1g02723 . . .
Pvu1g0439 . . . Aed6g1239 . . . . . . . . Arst10g02418 . . . . Cca05g00751 . . . . Gma17g02111 Gma14g00955 Gso14g0907 Gso17g1875 . . . . . . . . . . . . . . . . . . . . . . . . . . . Ssu5g0489 . . . . . . . . . .
Pvu1g0440 . . . Aed6g1238 . . . . . . . . Arst10g02420 . . . . Cca05g00442 . . . . Gma17g02110 Gma14g00956 Gso14g0908 . . . . . . . . . . . . . . . . . . . . Phco2g00504 . . Pste8g00298 Pumo9g00531 . Seca8g03294 Spst8g01851 Ssu5g0490 . . . . Vian7g00507 . Vimu1g02719 Viun8g00646 . .
   
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Select Species Gene Chromosome Start End Strand
Pvu Pvu1g0431 Chr1 4400833 4405289 -
Aed Aed6g1243 Chr6 17200130 17203448 +
Aev Aev07g1295 Chr07 11639509 11642819 -
Gma Gma17g02117 Chr17 38626439 38635176 +
Gma Gma14g00949 Chr14 10910495 10914231 -
Gso Gso14g0902 Chr14 10844747 10848417 -
Gso Gso17g1880 Chr17 37626508 37635199 +
Phco Phco2g00493 Chr2 4518748 4528231 -
Pste Pste8g00317 Chr8 1701102 1704915 +
Spst Spst8g01858 Chr8 22737608 22741088 +
Ssu Ssu5g0484 Chr5 10232843 10236752 -
Vimu Vimu1g02741 Chr1 39577447 39581320 +
Vra Vra6g1666 Chr6 32575880 32580258 +
Pvu Pvu1g0432 Chr1 4407412 4412002 -
Aed Aed6g1242 Chr6 17193443 17198973 +
Apr Apr9g0235 Chr9 3065651 3070879 -
Gma Gma17g02116 Chr17 38618707 38624296 +
Gma Gma14g00951 Chr14 11024233 11026768 -
Gso Gso14g0904 Chr14 10984862 10985960 -
Gso Gso17g1879 Chr17 37619649 37625442 +
Phco Phco2g00494 Chr2 4533223 4537928 -
Pste Pste8g00315 Chr8 1691609 1694923 +
Spst Spst8g01857 Chr8 22713124 22717240 +
Ssu Ssu5g0485 Chr5 10249439 10253236 -
Pvu Pvu1g0433 Chr1 4414947 4420979 -
Aed Aed6g1241 Chr6 17187155 17192752 +
Arst Arst10g02393 Chr10 85029860 85032679 -
Gma Gma17g02115 Chr17 38609698 38616413 +
Gma Gma14g00952 Chr14 11033571 11038680 -
Gso Gso14g0905 Chr14 10992937 10998080 -
Gso Gso17g1878 Chr17 37610734 37617470 +
Phco Phco2g00495 Chr2 4543066 4548406 -
Psa Psa6g0575 Chr6 19278420 19285049 +
Pste Pste8g00309 Chr8 1672457 1682605 +
Spst Spst8g01856 Chr8 22688284 22693447 +
Ssu Ssu5g0486 Chr5 10256901 10263244 -
Vimu Vimu1g02737 Chr1 39543469 39550092 +
Vra Vra6g1665 Chr6 32554648 32560581 +
Pvu Pvu1g0434 Chr1 4423653 4427463 -
Aed Aed6g1240 Chr6 17178623 17179772 +
Gma Gma17g02113 Chr17 38597377 38600737 +
Gma Gma14g00954 Chr14 11066415 11069945 -
Gso Gso14g0906 Chr14 11035304 11038889 -
Gso Gso17g1876 Chr17 37599854 37603271 +
Phco Phco2g00496 Chr2 4551186 4554804 -
Pste Pste8g00303 Chr8 1658486 1662369 +
Spst Spst8g01855 Chr8 22649021 22659824 +
Ssu Ssu5g0488 Chr5 10290939 10296038 -
Vimu Vimu1g02736 Chr1 39532638 39534827 +
Vra Vra6g1664 Chr6 32546883 32552116 +
Pvu Pvu1g0435 Chr1 4434001 4436529 -
Phco Phco2g00498 Chr2 4563115 4563813 -
Pste Pste8g00302 Chr8 1647980 1650601 +
Vimu Vimu1g02728 Chr1 39359409 39361982 +
Vra Vra6g1663 Chr6 32529017 32532058 +
Pvu Pvu1g0436 Chr1 4446837 4447613 -
Pvu Pvu1g0437 Chr1 4448871 4450274 -
Phco Phco2g00500 Chr2 4574308 4575462 -
Spst Spst8g01854 Chr8 22591858 22595385 +
Vimu Vimu1g02725 Chr1 39305467 39316876 +
Vra Vra6g1662 Chr6 32492312 32495699 +
Pvu Pvu1g0438 Chr1 4453481 4456137 -
Phco Phco2g00502 Chr2 4588988 4590142 -
Vimu Vimu1g02723 Chr1 39282974 39286519 +
Pvu Pvu1g0439 Chr1 4468363 4470742 +
Aed Aed6g1239 Chr6 17164933 17168208 -
Arst Arst10g02418 Chr10 85300663 85302568 +
Cca Cca05g00751 Chr05 20745878 20748218 +
Gma Gma17g02111 Chr17 38576871 38579491 -
Gma Gma14g00955 Chr14 11089059 11119972 +
Gso Gso14g0907 Chr14 11051714 11054425 +
Gso Gso17g1875 Chr17 37579213 37582131 -
Ssu Ssu5g0489 Chr5 10313081 10315209 +
Pvu Pvu1g0440 Chr1 4473407 4475832 -
Aed Aed6g1238 Chr6 17162635 17163549 +
Arst Arst10g02420 Chr10 85336237 85337267 -
Cca Cca05g00442 Chr05 9628913 9630051 -
Gma Gma17g02110 Chr17 38569813 38570688 +
Gma Gma14g00956 Chr14 11125205 11126323 -
Gso Gso14g0908 Chr14 11060367 11061668 -
Phco Phco2g00504 Chr2 4617696 4618586 -
Pste Pste8g00298 Chr8 1628770 1635437 +
Pumo Pumo9g00531 Chr9 8483271 8484381 -
Seca Seca8g03294 Chr8 94406231 94407148 -
Spst Spst8g01851 Chr8 22567659 22568606 +
Ssu Ssu5g0490 Chr5 10329616 10330659 -
Vian Vian7g00507 Chr7 12455284 12456189 +
Vimu Vimu1g02719 Chr1 39219428 39220760 +
Viun Viun8g00646 Chr8 4997865 4999100 -
Arst Arst10g02420 Chr10 85336237 85337267 -
Arst Arst10g02418 Chr10 85300663 85302568 +