Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0486 ATGAATAAGGGCGTTAGCCAAGAATCGAGCGTGCTCCTCGATTTGGCGTCCCACGTCAACCGCCTCGCCTTCGATTCCTCCTTCCTCAACTTCCGTTCCGACCACAACACCGTTCTCTCCAATTTCCTCCACTTCAGTTCGCGGGGGGGAGCGAGACGCGGCGTTTTGAAGGTGGGGGAGGCGAGTTTTAGGTTCAGGAACATTCTCAACGGGTTTAACAGGGCCGTTAGGCTTCATTGCGAGAGGATCCCGATTGGGTTCGCCTCGCTTCGCGTTGCGGACGGCGACggcggtggcggtggcggtAACGGTAACGGTGAGGGTGTCGGTAACGGGGTTGGAGTGGATGAGTGTGGTGTGGCGGAGGATGAGGGGTGTCGGGGGAATGGCGTGGAGGGTGAGAGACCCaagaaggttttgattttgatgaGTGACACCGGTGGGGGCCATCGAGCTTCCGCTGAAGCGATTAAAGCTGCTTTCTATGAAGAATTTGGAGATTATTATCAGGTTTTTGTTACTGATTTGTGGTCTGATCACACGCCTTGGCCGTTCAATCAACTTCCCAGGAGCTATAGCTTTTTGGTGAAACATGGGCCGTTGTGGAAGATGACCTACTATGGAACTGCCCCGCGTGTGGTGCATCAGTCTAATTTTGCTGCAACTGGAACTTTCATAGCTCGTGAGGTTGCTAAAGGCCTAATGAAATATCAGCCAGATATAATAATCAGCGTACATCCACTGATGCAGCATGTTCCACTTAGAATTTTGAGGTCAAGGGGTCTTTTAAAGAAGATTGTTTTTACTACAGTTGTCACTGATTTAAGCACATGCCATCCAACATGgTTTCATAAGCTTGTAACTAGATGCTATTGTCCTACAACAGATGTTGCGCAAAGGGCATTGAAAGCTGGATTGCAGCAATctcaaataaagatttttggTCTACCTGTGCGACCTTCCTTTGTTAAGCCTGTCCGGCCAAAGGATGAACTAAGGAGAGAATTAGGGATGGATGAGGATCTTCCTGCTGTATTATTGATGGGAGGAGGTGAAGGTATGGGCCCCATTGAGGCTACTGCTCGGGCGCTTGGAGATTTATTATATGATGAGAATGTTGGAGCCCCTGTAGGTCAGGTCCTTGTGATCTGTGGTCGTAATAAGAAACTTACTAACAAACTGAATTCTATTAATTGGAAGGTTCCTGTTCAGATCAAGGGATTTGTTACCAAAATGGAGGAATGCATGGGAGCTTGTGATTGCATCATTACAAAGGCGGGCCCAGGGACGATTGCAGAGGCCATGATCCGAGGCCTCCCTATTATTCTGAATGATTACATTGCTGGGCAGGAAGCTGGCAATGTCCCCTATGTAGTTGAAAATGGATGTGGGAAGTTCTCTAAATCGCCTAAGGAGATAGCAAAAATTGTTGCCGACTGGTTTGGTCCAAAAGCTTATGAACTACAACAAATGTCACAAAATGCATTGAGGCTAGCTAGGCCAGATGGTGTGTTCAAGATTGTTCATGACCTTCACGAGCTTGTTAGACAAAGAAGCTTCCTACCAGAGTATTCTTGTACAGCTTAA 1587 0.4606 MNKGVSQESSVLLDLASHVNRLAFDSSFLNFRSDHNTVLSNFLHFSSRGGARRGVLKVGEASFRFRNILNGFNRAVRLHCERIPIGFASLRVADGDGGGGGGNGNGEGVGNGVGVDECGVAEDEGCRGNGVEGERPKKVLILMSDTGGGHRASAEAIKAAFYEEFGDYYQVFVTDLWSDHTPWPFNQLPRSYSFLVKHGPLWKMTYYGTAPRVVHQSNFAATGTFIAREVAKGLMKYQPDIIISVHPLMQHVPLRILRSRGLLKKIVFTTVVTDLSTCHPTWFHKLVTRCYCPTTDVAQRALKAGLQQSQIKIFGLPVRPSFVKPVRPKDELRRELGMDEDLPAVLLMGGGEGMGPIEATARALGDLLYDENVGAPVGQVLVICGRNKKLTNKLNSINWKVPVQIKGFVTKMEECMGACDCIITKAGPGTIAEAMIRGLPIILNDYIAGQEAGNVPYVVENGCGKFSKSPKEIAKIVADWFGPKAYELQQMSQNALRLARPDGVFKIVHDLHELVRQRSFLPEYSCTA 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0486 528 Gene3D Glycogen Phosphorylase B; 328 499 - -
Ssu5g0486 528 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 137 514 - -
Ssu5g0486 528 Pfam Monogalactosyldiacylglycerol (MGDG) synthase 150 318 IPR009695 GO:0009247|GO:0016758
Ssu5g0486 528 PANTHER MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 1, CHLOROPLASTIC 80 518 - -
Ssu5g0486 528 Pfam Glycosyltransferase family 28 C-terminal domain 378 443 IPR007235 GO:0016758
Ssu5g0486 528 CDD GT28_Beta-DGS-like 139 516 - -
Ssu5g0486 528 PANTHER MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 80 518 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0486 Ssu-Chr5 10256901 10263244 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0486 65 528 Glycosyltransferase AT4G31780 73.374 0.0 726
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0486 K03715 - gmx:547469 929.087