Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02737 ATGAACAACGGTGTTAGGCAAGAATCCAGTGTGCTTCTCGATTTGGCATCCCACGTCAATCGCTTCGCCTTCGATCATTTTCGCACCGACATCGCTGTGCAATCCAGTTTCCTGCGCTTCAATGGCGGGGCGGGAGCCAAACGCGGCGTTTCGCTGAGGGTGGGGGCGGCTGGAGTTAGGGTCAGGAATATTTTGAGCGAGTTTAATAGAGCAGTTAGGTTTCACTGCGAGAAGATTCCGATTGGGTTCGCCTCGCTGCGAGTCGCGGAGGGCGACGGTGGTGGTGGTGGTGGCTGTGACGGGGACGGGGATGGGAGTGGGGTTAGAGTGGACGAGTGTGGCGGGGTGGAGAATGAGGGGCTTCGCGGGAATGGCGTGGGGGGTGAGAGGCCCAAAAAAGTTTTGATTTTGATGAGTGACACTGGTGGTGGGCATCGAGCTTCCGCTGAAGCTATCAAGGCTGCTTTCTATGAAGAATTTGGAGATGATTACCAGGTTTTCGTTACTGATTTGTGGGCTGATCACACACCTTGGCCGTTCAACCAACTTCCCAGGAGCTATAGCTTTTTGGTGAAGCACGGGCCATTGTGGAAGATGACTTACTATGGAACTGCCCCACGAGTTGTGCACCAGTCTAATTTTGCAGCAACTGGAACTTTCATAGCTCGGTCTAATGAAATATCAGCCAGATATAATAATCAGTGTGCATCCACTGATGCAGCACGTTCCACTTCGAATTTTGAGGTCAAAGGGTTTCATAAGCTCGTAACTAGATGCTATTGTCCTACAATAGATGTTGCGCAAAGGGCATTGAAAGCAGGATTGCAGCAATCCCAAATAAAGATTTTTGGTCTACCTGTCCGGCCTTCCTTTGTTAAGCCTGTCCGGCCAAAGGATGAACTAAGGAGAGATCTAGGGATGGATGAGGATCTTCCTGCTGTATTATTGATGGGGGGAGGGGAAGGTATGGGTCCCATTGAGGCTACTGCTCGAGCACTTGGAGATTCATTATACGACGAGAATATTGGGGCCCCCGTAGGTCAGATCCTAGTGATCTGTGGACGGAATAAGAAACTTCTTAACAAACTGACTTCTATTAATTGGAAGGTTCCTGTGCAGGTCAAGGGATTTGTTACCAAAATGGAGGAATGCATGGGAGCTTGTGATTGCATCATCACAAAGGCGGGTCCAGGGACGATTGCAGAAGCCCAGATCAGAGGCCTCCCTATTATTCTGAATGATTACATTGCTGGACAGGAAGCTGGCAATGTCCCCTATGTAGTTGAAAATGGATGTGGAAAGTTCTCTAAATCTCCTAAACAGATAGCAAAAATTGTTGCCGATTGGTTTGGTCCTAAAGCCTACGAGCTACAACAAATGTCACAAAATGCATTGAGGCTGGCAAGGCCAGACGCTGTGTTCAAGATTGTTCATGACCTTCACGAGCTGGTTAGACAAAGAAGCTACCTACCGGAATATTCTTGTTGGGTAGTACTTAAAGAGGGAAGTTCTGAAGTAGAAGACGCAACAATGTTAATGGCTCATTGGTGTTCGTCTTCAACTTGCAATGAGTGTGGAAGAAAGCATTTGTGTTCTATGAGCTCTCGTGGAGATGGAGGGTGGAACAAGAAATATGCATCGCTGATCTGCCATTGTGGAGAGAAGACTGTGTTGAGAACTGCAAAAACGACCAAGAATCGAGGGAAACAGTTCTGGGGTTGCCCTAGGTATAAGATGGGGAGTGAAAATGGAGGATGCAACTTCTTCAGATGGTTTAGTGATTGGGGAGTTGAAGAAAGTGTTAGTTGTGAGGTGTTGGAAGCAAATGATGAGAGGTTGGTGAAGACTTTTGAAAAGCAAGGTGTTAATCAGATCTTTGATGTGCAGAAAGTTGTGATGGGTCTTCAAAGTTGGATGAAATATTTGGTTGTGGTTGTTAGTGTTGTATTTATAATGAACATGATTATAATTGCAATGCTGATGGCAAGGGCTTGA 1995 0.4692 MNNGVRQESSVLLDLASHVNRFAFDHFRTDIAVQSSFLRFNGGAGAKRGVSLRVGAAGVRVRNILSEFNRAVRFHCEKIPIGFASLRVAEGDGGGGGGCDGDGDGSGVRVDECGGVENEGLRGNGVGGERPKKVLILMSDTGGGHRASAEAIKAAFYEEFGDDYQVFVTDLWADHTPWPFNQLPRSYSFLVKHGPLWKMTYYGTAPRVVHQSNFAATGTFIARSNEISARYNNQCASTDAARSTSNFEVKGFHKLVTRCYCPTIDVAQRALKAGLQQSQIKIFGLPVRPSFVKPVRPKDELRRDLGMDEDLPAVLLMGGGEGMGPIEATARALGDSLYDENIGAPVGQILVICGRNKKLLNKLTSINWKVPVQVKGFVTKMEECMGACDCIITKAGPGTIAEAQIRGLPIILNDYIAGQEAGNVPYVVENGCGKFSKSPKQIAKIVADWFGPKAYELQQMSQNALRLARPDAVFKIVHDLHELVRQRSYLPEYSCWVVLKEGSSEVEDATMLMAHWCSSSTCNECGRKHLCSMSSRGDGGWNKKYASLICHCGEKTVLRTAKTTKNRGKQFWGCPRYKMGSENGGCNFFRWFSDWGVEESVSCEVLEANDERLVKTFEKQGVNQIFDVQKVVMGLQSWMKYLVVVVSVVFIMNMIIIAMLMARA 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02737 664 Gene3D Glycogen Phosphorylase B; 297 468 - -
Vimu1g02737 664 Pfam Glycosyltransferase family 28 C-terminal domain 347 432 IPR007235 GO:0016758
Vimu1g02737 664 Pfam GRF zinc finger 549 592 IPR010666 GO:0008270
Vimu1g02737 664 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 135 485 - -
Vimu1g02737 664 PANTHER MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 252 495 - -
Vimu1g02737 664 Pfam Monogalactosyldiacylglycerol (MGDG) synthase 252 287 IPR009695 GO:0009247|GO:0016758
Vimu1g02737 664 Pfam Monogalactosyldiacylglycerol (MGDG) synthase 145 223 IPR009695 GO:0009247|GO:0016758
Vimu1g02737 664 ProSiteProfiles Zinc finger GRF-type profile. 550 595 IPR010666 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02737 Vimu-Chr1 39543469 39550092 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02737 56 495 Glycosyltransferase AT4G31780 58.283 0.0 533
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02737 K03715 - gmx:547469 822.772