Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02728 ATGTTCAACGCTGCCTTTTGCAGCTTCAATATTCGTTGCAACCAACAAGACTTGCATGCTCTGTTCAACTTCAAGCAAGGAGTGGCAGATCCCTCAAGTGTCCTTTCTTCATGGTCCACTAAACTAGATTGTTGTGATTGGAAAGGAGTCATCTGTAGCAACATCACTAGTAGAGTCACTGGAATCTCTCTCCCATGTTCTACAATTCCTCCAATTTACATTGACAAAGAAGATAAATCACATTGTCTTACAGGTTCCATTAACCTCTCCTTGTTGTTAGTGGAGTTGGAATTTTTAGAATTCTTGAATTTGAGAAACAATGACTTCTTAGCATTACAATTTGATTATCTGCATAATCATAATTGTCACAATCTATCTATAGCTACTTCTTCTCATAGTCAGTGTGTCAACTCTTCAACTCTTCGTCATCTTGATATATCGCGTAACAGGAATATTGCCATCAATAACCTTAAATGGCTTCCCTACATTTCCACATTGGAATATCTTAATCTCTGCAGTGTTGATCTTAGCGAGGAAACTAATTGGCTTCAATTAGTGACTAAGCTTTCATCACTTTCACTCCTTGCTATGCGTGGTTGTCAGCTTAAAGACTTAAGTTTGTCTCTCCGGTATGCTAATTTTACTGCCCTCCAGGTTCTTGACCTTTCTGGAAATGCATTCAATTCAGAGTTACCTTATTGGCTATTCAATCTTAGTTCCACTATCTATACTTTAGACTTTAGCTCAAGTTCTTTAGTAGGGCATCTACCTAAGGATTTGTTAAATCTTCGAGAACTGGAATTCCTGAACATGGAAGACAATAACTTTGATGGACCCATTCCAGATTGGTTAGGTCATTTCAAACATTTAGAAACTCTTATTCTTGGAGTAAACAACTTTTCAGGATCTATTCCCATAAATTTGGGAAACCTATCAACCTTGATTAACTTGGTTGTTGGCTCAAATCCATTGACTGGAGTTGTGTCTGAAAGAAATTTTGCCAAATTGTCAAAATTAAAGTTCCTAAATATATACTCTTATATCGGGTTAATCTGTGATTTTGACTCAGATTGGATTCCACCATTTCAACTTGAGGAATTAGTACTCGGGTTTTCAAATCCCAACCTTCCTGCGTGGTTTTATACACAACGATCACTTGAAAGATTAACTATATTGGATTCAACATTTGAGGCTCCAGAAAAATTTTGGCAATTTGTATCATCAGTGATTGAACTCGACTTAGAAGACAATTTAATAGACGGAGACATGTCAAATGTGTTGTTGAACTCTACAATCATTGATCTATCATCAAATGGTTTGAAAGGTTGCTTGCCTCAATTATCAGCAAACGTGGTTATTGTCTCTTTATCAAATAATTTATTATCAGGAGAATTGTCTCCCCTCTTATGTGGTCATAATGTGTCGAATGGGAAAAACAATTTGTTGTATTTGGACATATCATTGAATAATGTATCTGGAGGACTTACGAATTGTTGGAAGAATTGGAAATCTTTGGTTGCTATTCACTTGGGAAGCAATAATCTATCAGGAAAGATACCTCCATCATTAGGCTTCTTATCTAATCTCACCTCACTCCATTTGCATGAGAATAAACTACATGGACAAGTTCCTCTCTCATTGCAAAATTGTCGCTCTCTCTTGGTTTTCAATGTTCGCAATAACCGATTATCAGGAAACATACCAGATTGGATATCTCATGGGGTATTGGCTCTTCAATTAAGGTCCAATTATTTTGGTGGTAAAATCTCACCACAAATATGTCAAATGTCTTCTCTCATTGTGTTGGATATTGCACAAAACACAATTTCCGGTCATATACCTACTTGTCTTGGTAATATCAAAACCCTACTTTTCAACAATGTTTCACATAACAAACTTTCTTTTAATTTTCCTACATCATATCCTAATCGTTTCTACGGCAATGATGACAATCTTGAATTGGTTACTAAAGGTCAAGTATTAGAATATGGAAGAAACCTACATTTTATGACCTTAATTGATATGTCAAGCAACAATCTGTCCGGAACAATACCTCCACAACTGTTTAGTCTCATTGGATTGCATTCCTTGAATTTATCCAACAACAAATTAGAAGGAGAAATACCAAATGAGATAGGAAATATGAAAAACTTGGAGTCCCTCGATTTTTCAACAAACCAACTTGGGGGAGAAATTCCTCAAAGTTTATCCAGATTGTCCTTTTTGGGTTACTTGAACCTGTCATTCAATGATTTGACAGGAAAAATAGCATCAGGCACACAACTTCAGGGATTCAGTACATTAAGTTACATGGGCAATCATGATCTTTGTGGACCCCCACTTACCAAAATCTGCTTTCAGGATGATAAAGATGAACACACAAAGCTTGTAGATGAAGACGGAAATCAATCTAAATTTTTTGAATGGTTTTACATCGGAATGGAATCCGGATTTGTGACAGGCTTTGTGGGAGTTTGTTGTGCTATTTTCTTAAACAAGAAGTTCAGGCATGTTTTTTTCAAGTTTCTTTATGACTTGAGATATCGACTTCATGTATGGTGGTCGTCAACATGA 2574 0.3621 MFNAAFCSFNIRCNQQDLHALFNFKQGVADPSSVLSSWSTKLDCCDWKGVICSNITSRVTGISLPCSTIPPIYIDKEDKSHCLTGSINLSLLLVELEFLEFLNLRNNDFLALQFDYLHNHNCHNLSIATSSHSQCVNSSTLRHLDISRNRNIAINNLKWLPYISTLEYLNLCSVDLSEETNWLQLVTKLSSLSLLAMRGCQLKDLSLSLRYANFTALQVLDLSGNAFNSELPYWLFNLSSTIYTLDFSSSSLVGHLPKDLLNLRELEFLNMEDNNFDGPIPDWLGHFKHLETLILGVNNFSGSIPINLGNLSTLINLVVGSNPLTGVVSERNFAKLSKLKFLNIYSYIGLICDFDSDWIPPFQLEELVLGFSNPNLPAWFYTQRSLERLTILDSTFEAPEKFWQFVSSVIELDLEDNLIDGDMSNVLLNSTIIDLSSNGLKGCLPQLSANVVIVSLSNNLLSGELSPLLCGHNVSNGKNNLLYLDISLNNVSGGLTNCWKNWKSLVAIHLGSNNLSGKIPPSLGFLSNLTSLHLHENKLHGQVPLSLQNCRSLLVFNVRNNRLSGNIPDWISHGVLALQLRSNYFGGKISPQICQMSSLIVLDIAQNTISGHIPTCLGNIKTLLFNNVSHNKLSFNFPTSYPNRFYGNDDNLELVTKGQVLEYGRNLHFMTLIDMSSNNLSGTIPPQLFSLIGLHSLNLSNNKLEGEIPNEIGNMKNLESLDFSTNQLGGEIPQSLSRLSFLGYLNLSFNDLTGKIASGTQLQGFSTLSYMGNHDLCGPPLTKICFQDDKDEHTKLVDEDGNQSKFFEWFYIGMESGFVTGFVGVCCAIFLNKKFRHVFFKFLYDLRYRLHVWWSST 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02728 857 Pfam Leucine rich repeat N-terminal domain 15 53 IPR013210 -
Vimu1g02728 857 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 474 567 - -
Vimu1g02728 857 PANTHER LRR RECEPTOR-LIKE KINASE 13 845 - -
Vimu1g02728 857 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 238 328 - -
Vimu1g02728 857 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 663 785 - -
Vimu1g02728 857 Gene3D Ribonuclease Inhibitor 9 151 IPR032675 -
Vimu1g02728 857 SMART LRR_typ_2 526 549 IPR003591 -
Vimu1g02728 857 SMART LRR_typ_2 667 691 IPR003591 -
Vimu1g02728 857 SMART LRR_typ_2 715 739 IPR003591 -
Vimu1g02728 857 SMART LRR_typ_2 214 238 IPR003591 -
Vimu1g02728 857 SUPERFAMILY L domain-like 188 424 - -
Vimu1g02728 857 Gene3D Ribonuclease Inhibitor 181 239 IPR032675 -
Vimu1g02728 857 Gene3D Ribonuclease Inhibitor 240 354 IPR032675 -
Vimu1g02728 857 Gene3D Ribonuclease Inhibitor 355 788 IPR032675 -
Vimu1g02728 857 SUPERFAMILY L domain-like 13 240 - -
Vimu1g02728 857 SUPERFAMILY RNI-like 429 770 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02728 Vimu-Chr1 39359409 39361982 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02728 206 823 Receptor kinase-like Gene Family AT2G33050 31.523 9.12e-67 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02728 - - vum:124822649 1162.9