Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu10g0809 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Pste6g00093 . . . . . . . . . . . Vimu9g00705 . . .
Pvu10g0810 . . . . . . . . . Amo12g2629 . . . . . Bva02g00865 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Pste6g00098 . . . . . . . . . . . Vimu9g00703 . Vivi5g01006 .
Pvu10g0811 . . . Aed2g1103 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal7g0387 . . . . . . . . . . . . Spst4g00998 . . . . . . . . . Vivi5g00638 Vra9g1228
Pvu10g0812 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal7g0382 . . . . . Phco1g01301 . . . . . . . . . . . . . . . . Vivi5g00640 .
Pvu10g0813 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal7g0378 . . . . . Phco1g01296 . . . . . . . . . . . . . . . . Vivi5g00642 .
Pvu10g0814 . . . . . . . . . . . . . . . . . . . . . . Gma03g00646 . . . . . . . . . . . . . . . . . . . . . . Phco1g01295 . . Pste6g00059 . . . . . . . . . . . . . . .
Pvu10g0815 . . . Aed2g1082 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Spst4g01017 . . . . . . . Vimu9g01010 . . .
Pvu10g0816 . . . Aed2g1079 . . . . . . . . . . . . Car06g02471 . . . . . . . . . . . . . . . . . . . . . . . Mepo2g00394 Mesa13g05102 . Mtr4g0375 . . . . . . . . Spst4g01019 . . Tpr4g0692 Trre7g00378 Tsu06g00344 . . Vimu9g01016 . . .
Pvu10g0817 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0818 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 2484 of 2800 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Phco Phco1g01295 Chr1 26657144 26662934 +
Pvu Pvu10g0809 Chr10 25634080 25635098 -
Pste Pste6g00093 Chr6 279146 279539 -
Vimu Vimu9g00705 Chr9 10428627 10429295 +
Pvu Pvu10g0810 Chr10 25697902 25702583 -
Amo Amo12g2629 Chr12 110876173 110880214 -
Bva Bva02g00865 Chr02 12542085 12548358 -
Pste Pste6g00098 Chr6 293545 298275 -
Vimu Vimu9g00703 Chr9 10266656 10270831 +
Vivi Vivi5g01006 Chr5 24187150 24191649 +
Pvu Pvu10g0811 Chr10 25930770 25935442 -
Aed Aed2g1103 Chr2 8992745 8997520 -
Mal Mal7g0387 Chr7 9046135 9095852 +
Spst Spst4g00998 Chr4 41777687 41781407 +
Vivi Vivi5g00638 Chr5 11911234 11913975 -
Vra Vra9g1228 Chr9 19111865 19116126 -
Pvu Pvu10g0812 Chr10 26197918 26207222 -
Mal Mal7g0382 Chr7 8993972 9002833 +
Phco Phco1g01301 Chr1 27972652 27997345 +
Vivi Vivi5g00640 Chr5 12070138 12077651 -
Pvu Pvu10g0813 Chr10 26668466 26685130 +
Mal Mal7g0378 Chr7 8703730 8715717 -
Phco Phco1g01296 Chr1 27130964 27140727 -
Vivi Vivi5g00642 Chr5 12117392 12129263 +
Pvu Pvu10g0814 Chr10 26711849 26712965 -
Gma Gma03g00646 Chr03 20154276 20156477 +
Phco Phco1g01295 Chr1 26657144 26662934 +
Pste Pste6g00059 Chr6 180364 182437 -
Pvu Pvu10g0815 Chr10 27091864 27093588 -
Aed Aed2g1082 Chr2 8728083 8729729 +
Spst Spst4g01017 Chr4 42167816 42171761 -
Vimu Vimu9g01010 Chr9 17000570 17002436 -
Pvu Pvu10g0816 Chr10 27501563 27506983 +
Aed Aed2g1079 Chr2 8704346 8710256 -
Car Car06g02471 Chr06 27779931 27784662 -
Mepo Mepo2g00394 Chr2 4215417 4221124 -
Mesa Mesa13g05102 Chr13 81494735 81500568 +
Mtr Mtr4g0375 Chr4 4441229 4447423 -
Spst Spst4g01019 Chr4 42186900 42190382 +
Tpr Tpr4g0692 Chr4 6373846 6379301 -
Trre Trre7g00378 Chr7 2414888 2419431 -
Tsu Tsu06g00344 Chr06 2841526 2846776 -
Vimu Vimu9g01016 Chr9 17072129 17076191 +
Pvu Pvu10g0817 Chr10 27669830 27675250 -
Pvu Pvu10g0818 Chr10 27975589 27977802 -