Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01016 ATGCAATACAACATCTTCCCAATAATGCGTGGCTTCAACATCATTGACGGTTGCAAGGGAACTCAATTGTATACTATCAACCCCTCCGGCACCGGCACCGGCACCGCCACCTGCAGTGGTATTGGCGATAAGCTTCTCCAACAACTCCACGATCACATTAAGACCCAAACCCTTAGAACCAAATCCAATCGGAGCTTCCGTTCTCCGAACGCCACCCCACCTTCCGAGGTTGTCTTTTGTGAGGGCTCCCTCCTCCCCTATGGCCTCCCCATGACAGAACTTCTTGAACCCAAAATTGAACCGTCCCTCGTCTCTCCCGATTTAGTGGAAACCCTCGCCGGTGCTTATCGTCGTGCCGAGGACTGCCCCCAGTTCGAGCGCACCGAGGTCTTCCTCCAGCAATGCACCATCTTTCGAGGCTTAGCAGACCCCAAGCTCTTCCGTCGCACCCTTCGCGCCGCTCGGCAGCACGCCACTAGCGTGCATGCTAAGGTCGTGCTCGCCGCATGGCTGCGCCACGAGCGCCGTGAGGACGAGCTCATCGGGTTGTCTTCCATGGACTGCAGAGGGAGGAACCTCGAGTGTCCCCGGGCCACCTTGGAGCCAGGCTATGACCCGGAGTCTGTGTTTGATCCTTGCTTGTGCACGCGTTCACGTGCTGTGAATGCTGATGCTTATAGTGATGTTGGTTATGGTGCAATGGTGGCAGAGGATGATGACGACGATGAGCAACGCCCCACGTCCGAGGAAGAGGATGGTGACATGTCGTTCATTGTCGGTGAAGATGAAGTTAGGTGCAATAGGTTCAACATAGCCTCACTTTCAAGGCCCTTTAAGACAATGTTGTATGGTGAATTCGTAGAGTCAAAAAGGGAGCACATTAATTTTTCACAGAATGGTTTTTCTGTTGAGGCACTGAAAGCTGCTAAGGAGTTCAGTAGAAGTAAGAGATTGACCCATTTGGAGCCTATGGCTGTGTTGGAATTGTTGTCTTTTGCGAATCGTTTTTGTTGTGAGGAGATGAAGCATGCCTGTGACGTACATTTGGCTTTGCTAGTTTGTGACCTGGAGGATGCGTTGTTGCTTATTGAGTATGGATTGGAGGAAACTGCATACCTTCTTGTTGCAGCTTGCTTGCAGGTGTTTCTCCGAGAGCTCCCAAGTTCGATGCAGTGTTCGAGTTTTGTGAGGATGCTTTCTAGTCCAGAGGGTAGGGATAGGCTAGCCATGGCGGGGCACGCGTCGTTCATGTTGTATTACTTTTTGAGTCAGGTTGCGATGGAGGAAGAGATGAGATCTAACACAACTGTGATGTTGTTGGAGAGGTTAGTGGAGTGTGCAAAAGATGGTTGGGAGAAGCAACTTGCGTTTCACCAAATGGGCGTTGTTATGCTTGAGAGAAAAGAATACAAAGATGCACAGCATTGGTTTCAGTCTGCAGTGGAGGCAGGGCATGTTTATTCTACGGTGGGAGTTGCAAGGGCCAAATACAAGCGTGGCCACACGTATTCAGCATATAAGTTGATGAACTCACTTGTTTCTGAACATAAACCAGTTGGGTGGATGTATCAAGAAAGGTCTCTGTATTGTATGGGGAAGGAGAAACAAATGGACTTGCTATCAGCAACTGAGTTAGATCCAACTCTTTCATTTCCTTATAAATTTCGAGCTGTTTCTTTCTTGGAAGAGAACAGGATTGAATCTGCCATTGCAGAAATCAATAAAGTAATCGGTTTCAAGGTTTCTGCAGATTGCCTTGAACTGAGAGCTTGGTTCTTGATTGCCATGGAGGATTATGAAGGAGCCCTTAGAGATGTTCGGGCAATTTTGACGTTGGATCCAAATTATATGATGTTTTATGGCCATATGCATGGTGAGCACTTGATAGAACTTCTCAGTCCTGTTGTTCAGCAGTGGTGCCAAGCTGATTGTTGGATGCAATTGTATGATCGGTGGTCCTCTGTCGATGATATTGGTTCATTGGCTGTTGTACACCAAATGTTAGCAAATGATCCGGGGAAAAGTCTTTTACGTTTTCGACAATCTCTCCTTCTGCTACGGTTAAATTGTCCAAAGGCTGCCATGCGTAGTTTGCGGATGGCTAGAAACCATTCTAGTTCTGACCATGAAAGACTTGTGTATGAAGGTTGGATATTGTATGACACTGGTCATCGTGAAGAAGCATTAGCAAAAGCTGAGGAATCTATTTCAATTCAAAGATCATTTGAAGCTTACTTTCTCAAAGCATATGCATTAGCTGACTCAAATCTTGACTCAGAGTCTTCTAAGTATGTGATCCATCTCTTGGAGGAAGCTCTAAGATGCCCTTCAGATGGTCTTCGGAAAGGGCAAGCACTGAATAATCTAGGGAGTGTCTTTGTAGACTGTGATAAACTAGACCTTGCTGCTGACTGCTACATGAATGCACTCAACATCAAGCATACACGTGCACATCAAGGGTTGGCACGAGTATATCATCTTAAAAACCACCGCAAAGCAGCATATGACGAGATGACAAAGCTAATAGAAAAGGCTCGAAGCAATGCATCAGCATATGAGAAACGTTCAGAATATTGTGATCGTGACATGGCAAAGAGTGATCTTAGTATGGCATCAGAATTGGACCCTCTCAGGACTTATCCTTACAGATATAGAGCAGCTGTTTTGATGGATGATCACAAGGAAGCTGAGGCAATAGCAGAGCTTTCAAGAGCCATTGACTTTAAGCCAGATCTACAATTATTACATCTTCGAGCGGCATTTTATGAATCAATGGGTGATTATGCTTCAGCTGTGCGGGACTGTGAAGCAGGCCTCTGTCTTGATCCTAATAATAATGAAATTCTTGATCTTTGTAACAAAGCACGAGAGCATCTTAGAGAACAACCAAAGTAG 2895 0.4629 MQYNIFPIMRGFNIIDGCKGTQLYTINPSGTGTGTATCSGIGDKLLQQLHDHIKTQTLRTKSNRSFRSPNATPPSEVVFCEGSLLPYGLPMTELLEPKIEPSLVSPDLVETLAGAYRRAEDCPQFERTEVFLQQCTIFRGLADPKLFRRTLRAARQHATSVHAKVVLAAWLRHERREDELIGLSSMDCRGRNLECPRATLEPGYDPESVFDPCLCTRSRAVNADAYSDVGYGAMVAEDDDDDEQRPTSEEEDGDMSFIVGEDEVRCNRFNIASLSRPFKTMLYGEFVESKREHINFSQNGFSVEALKAAKEFSRSKRLTHLEPMAVLELLSFANRFCCEEMKHACDVHLALLVCDLEDALLLIEYGLEETAYLLVAACLQVFLRELPSSMQCSSFVRMLSSPEGRDRLAMAGHASFMLYYFLSQVAMEEEMRSNTTVMLLERLVECAKDGWEKQLAFHQMGVVMLERKEYKDAQHWFQSAVEAGHVYSTVGVARAKYKRGHTYSAYKLMNSLVSEHKPVGWMYQERSLYCMGKEKQMDLLSATELDPTLSFPYKFRAVSFLEENRIESAIAEINKVIGFKVSADCLELRAWFLIAMEDYEGALRDVRAILTLDPNYMMFYGHMHGEHLIELLSPVVQQWCQADCWMQLYDRWSSVDDIGSLAVVHQMLANDPGKSLLRFRQSLLLLRLNCPKAAMRSLRMARNHSSSDHERLVYEGWILYDTGHREEALAKAEESISIQRSFEAYFLKAYALADSNLDSESSKYVIHLLEEALRCPSDGLRKGQALNNLGSVFVDCDKLDLAADCYMNALNIKHTRAHQGLARVYHLKNHRKAAYDEMTKLIEKARSNASAYEKRSEYCDRDMAKSDLSMASELDPLRTYPYRYRAAVLMDDHKEAEAIAELSRAIDFKPDLQLLHLRAAFYESMGDYASAVRDCEAGLCLDPNNNEILDLCNKAREHLREQPK 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01016 964 Coils Coil 835 855 - -
Vimu9g01016 964 SUPERFAMILY POZ domain 250 349 IPR011333 -
Vimu9g01016 964 SMART tpr_5 912 945 IPR019734 GO:0005515
Vimu9g01016 964 SMART tpr_5 709 742 IPR019734 GO:0005515
Vimu9g01016 964 SMART tpr_5 783 816 IPR019734 GO:0005515
Vimu9g01016 964 SMART tpr_5 583 616 IPR019734 GO:0005515
Vimu9g01016 964 SUPERFAMILY TPR-like 668 812 IPR011990 GO:0005515
Vimu9g01016 964 SUPERFAMILY TPR-like 455 620 IPR011990 GO:0005515
Vimu9g01016 964 PANTHER ETO1-RELATED 9 961 IPR044631 GO:0010105
Vimu9g01016 964 SUPERFAMILY TPR-like 769 947 IPR011990 GO:0005515
Vimu9g01016 964 Gene3D Tetratricopeptide repeat domain 860 964 IPR011990 GO:0005515
Vimu9g01016 964 Gene3D Tetratricopeptide repeat domain 415 630 IPR011990 GO:0005515
Vimu9g01016 964 Gene3D Tetratricopeptide repeat domain 639 859 IPR011990 GO:0005515
Vimu9g01016 964 Gene3D Potassium Channel Kv1.1; Chain A 246 392 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01016 Vimu-Chr9 17072129 17076191 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01016 - - gmx:100794758 1605.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g04569 6 51539840 51548671 Vimu9g01016 9 17072129 17076191 PCT