Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g1228 ATGGACAGCATCGGCTCCCTCGACTCTACTAAGCCCGCCAACAACGACGTCGGCAATGTCCCCAACGGCACCGCTTCAGCCATCAAGAACTCCCTCCCCGCCACAGCCATCACCTCCACCGAGGCCACCCTCGGCCGCCACCTCGCGCGCCGCCTCGTCCAGGTTGGGGTCACAGACGTTTTCTCCGTCCCCGGTGACTTTAACCTCACCCTCCTCGACCACCTCATTGCGGAGCCCAAACTCACCAACATCGGATGTTGCAACGAACTCAATGCCGGCTACGCCGCCGACGGCTACGCACGGTGCCGGGGCGTCGGCGCTTGCGTGGTGACGTTCACAGTGGGCGGCCTGAGTGTGATCAACGCAATCGCCGGCGCGTACAGTGAGAACCTTCCGGTGATCTGCATCGTCGGTGGACCCAACACGAACGACTTCGGCACCAACAGGATCTTGCATCACACCATTGGATTGCCGGATTTCAGCCAGGAACTCAGGTGCTTCCAAACTGTTACCTGCTACCAGGCTGTGGTGAATAACATAGAGGATGCTCATGAAATGATTGATACTGCGATCTCAACCTGTTTGAAAGAAAGCAAGCCCGTCTACATAAGCATAAGCTGTAACTTGCCAGGCATTCCTCACCCCACTTTCAGTCGTGAACCAGTTCCATTTTCTCTCTCTCCCAGATTGAGTAACAAGCTAGGGTTGGAGGCAGCAGTGGAGGCAGCAGCAGCGTTCCTAAACAAGGCAGTGAAGCCTGTAATGGTGGGTGGTCCAAAACTGAGGGTGGCTAAGGCATCTGAGGCTTTTGTTGAGCTTGCAGATGCATGTGGCTATCCATTTGCTGTGATGCCATCAGCCAAAGGACTAGTACCTGAGTACCACCCGCACTTCATTGGCACATTCTGGGGAGCTGTGAGCACTGCTTTCTGTGCTGAGATTGTGGAATCTGCAGATGCATACTTGTTTGCTGGCCCCATTTTCAATGACTACAGTTCAGTAGGGTACTCTCTCCTTCTCAAGAAGGAGAAGGCCATCATTGTGCAGCCTGACAGGGTTGTGATCTCAAATGGACCTGCATTTGGGTGTATCCTCATGAAGGACTTCCTCACAGCACTTGCAAAGCGTCTTGAGCATAACAACACTGCATATGAAAACTATGCCAGGATATTTGTCCCTGATGGAAAGCCTCTGAAGGCTGAACCGGGAGAGCCTTTGAGGGTTAATATACTGTTTAAGCATGTTCAAGAAATGCTGTCTGGTGAGACTGCTGTGATTGCTGAGACAGGGGACTCATGGTTTAACTGCCAAAAGCTGAAGTTGCCAAAAGGATGTGGGTACGAGTTCCAAATGCAATATGGTTCAATTGGATGGTCTGTTGGTGCAACTCTTGGTTATGCTCAGGCTGTTCGTCCAAAGCGTGTGATTTCTTGCATTGGTGATGGAAGCTTTCAGGTGACAGCTCAGGATGTCTCCACAATGATACGAAATGAGCAGAATCCCATCATCTTCCTGATAAACAACGGTGGATACACCATTGAAGTTGAAATTCATGACGGGCCATACAATGTGATTAAGAACTGGAACTACACTGCCTTGATTGATGCAATCCACAATGGTGACGGGAAATGCTGGACCAGTAAGGTGACATGCGAGGAGGAACTTACTGAAGCAATTCAGACAGCAACAGGAGAGAAGAAAGATTGCTTATGTTTCATTGAGGTGATTGTTCACAAGGATGATACGAGCAAAGAATTGCTTGAGTGGGGCTCAAGGGTCTGTGCTGCAAATAGTCGTCCTCCTAATCCTCAGTGA 1815 0.508 MDSIGSLDSTKPANNDVGNVPNGTASAIKNSLPATAITSTEATLGRHLARRLVQVGVTDVFSVPGDFNLTLLDHLIAEPKLTNIGCCNELNAGYAADGYARCRGVGACVVTFTVGGLSVINAIAGAYSENLPVICIVGGPNTNDFGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNIEDAHEMIDTAISTCLKESKPVYISISCNLPGIPHPTFSREPVPFSLSPRLSNKLGLEAAVEAAAAFLNKAVKPVMVGGPKLRVAKASEAFVELADACGYPFAVMPSAKGLVPEYHPHFIGTFWGAVSTAFCAEIVESADAYLFAGPIFNDYSSVGYSLLLKKEKAIIVQPDRVVISNGPAFGCILMKDFLTALAKRLEHNNTAYENYARIFVPDGKPLKAEPGEPLRVNILFKHVQEMLSGETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQAVRPKRVISCIGDGSFQVTAQDVSTMIRNEQNPIIFLINNGGYTIEVEIHDGPYNVIKNWNYTALIDAIHNGDGKCWTSKVTCEEELTEAIQTATGEKKDCLCFIEVIVHKDDTSKELLEWGSRVCAANSRPPNPQ* 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g1228 604 Gene3D - 230 392 - -
Vra9g1228 604 CDD TPP_PYR_PDC_IPDC_like 46 207 - -
Vra9g1228 604 Pfam Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 43 210 IPR012001 GO:0030976
Vra9g1228 604 Pfam Thiamine pyrophosphate enzyme, central domain 240 356 IPR012000 GO:0000287|GO:0030976
Vra9g1228 604 PANTHER PYRUVATE DECARBOXYLASE 3 604 IPR012110 GO:0016831
Vra9g1228 604 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 405 598 IPR029061 -
Vra9g1228 604 CDD TPP_PDC_IPDC 405 587 - -
Vra9g1228 604 PANTHER PYRUVATE DECARBOXYLASE-RELATED 3 604 - -
Vra9g1228 604 Gene3D - 397 589 - -
Vra9g1228 604 SUPERFAMILY DHS-like NAD/FAD-binding domain 235 383 IPR029035 -
Vra9g1228 604 Gene3D - 38 215 - -
Vra9g1228 604 MobiDBLite consensus disorder prediction 1 22 - -
Vra9g1228 604 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 43 217 IPR029061 -
Vra9g1228 604 PIRSF Pyruvt_ip_decrb 38 599 IPR012110 GO:0016831
Vra9g1228 604 Pfam Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 450 575 IPR011766 GO:0003824|GO:0030976
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g1228 Vra-Chr9 19111865 19116126 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g1228 K01568 - gmx:100787315 1128.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g1228 9 19111865 19116126 Vra9g1228 9 19111865 19116126 ECH