Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01019 ATGCAACACAACATCTTTCAGACAATGCGTAGCATGAAGATCATGGACGGTTGCAGGGGCACTCAGGTCTATGCTATCAATCCCTCCTCCGGCACCGGCAGTGGACTTGGCGAAAAGCTTTTCCAACAACTCCACGACCACTTTAAGGCCCAAACCCTTAGGACCAAATCCAATCGGAACTTCCAAACTCCGAATTCAACGCCACCTTCCGAGGCTTCATTCTCTGATGGATCTCTCCTCCCCTATGGTCTCCCCATGACAGACCTCCTTGAACCCAAAATCGAACCGTCCCTCATGTCTGTCGACTTCGTGGAAACCCTCGCTAGCGTCTATCGTCGAGCTGAGGAGCGCCCTCAGTTCGAGCGCACTGAGGTCTTCCTTGAGCAATGCACCATCTTCCGCGGATTAGCAGACCCGAAGCTCTTCCGTCGAAGCCTTCGCGCCGCTCGACAACATGCTACTAACGTGCATGTTAAGGTTGTGCTCGCCGCGTGGCTGCGCCACGAGCGCCGCGAGGACGAGCTCATCGGCTCGTCTTCTATGGACTGCAGCGGGAGGAACCTGGAGTGTCCTCGCGCCTCACTGGAGCCAGGCTATGACCCAGAGTCAGTGTTTGATCATTGCGCGTGCACACGCGCATGTGCAAGAGATTATGATAGTTATGATGGTAATAGTGAAATGACGCTAGAGGTTGATGATGAGCAAGGCTCCATTTCGGAGGAAGAGGATGGTGACATGTCATTTATTGTTGGTGAAGATGAAATTAGGTGTAGGAGGTTCAATATAGCCTCACTTTCAAGGCCCTTTAAGACAATGTTGTATGGTGAATTCATAGAGTCAAGGAGGGAGAAAATTAATTTTTCACAGAATTGTTTTTCTGTTGAGGCATTGACTGCTGCGGAGGAGTTTAGTAGAAGTCAGAGGTTGAGCCATTTGGAGCCTAAGGTTGTTTTGGAGTTGTTGTCTTTGGCGAATCGTTTTTGTTGTGAGGAGATGAAGCATGCTTGTGATTCACATTTGGCATTTCTAGTTTGTGACATAGACGATGCCTTGTTGCTTGTTGATTATGGATTAGAGGAGACTGCATACCTTCTTGTGGCAGCTTGCTTGCAGGTGTTTCTCCGAGAGCTCCCCGGTTCAATGCAAAGTTCGAGTGTCATGAAGATATTTTGTAGTCCAGAGGGCAGGGATAGGCTGGCTATGGCGGGGCACGCGTCATTTGTTTTGTATTATTTTTTAAGTCAGATTGCGATGGAGGAAGAGATGAGATCTAATACAACTGTGATGTTGTTGGAGAGGTTAGTGGAGTGTGCAAATGATGGTTGGGAGAAGCAAATTGCGTTTCACCAATTGGGCGTTGTTATGCTTGAGAGAAAAGAATACAAAGATGCACAACATTGGTTTGAGTTAGCAGTGGAGGCAGGACATGTTTATTCATTGGTGGGAGTTGCAAGGGCCAAATATAAGCGTGGTCACACGTATTCAGCATATAAATTGATGAACTCACTTATTTCTGATCATAAACCAGTTGGTTGGATGTATCAAGAAAGGTCTTTGTATTGTGTTGGGAAGGAGAAACAAATGGACTTGCTATCTGCAACTGAGTTAGATCCAACTCTTTCCTTTCCTTATAAATTTCGAGCTGTTTCTTTGTTGGAGGAAAATAAGATTGAACCTGCCATTGCAGAAATCAATAAAGTAATCGGTTTCAAGGTTTCTCCAGATTGCCTTGAACTGAGAGCTTGGTTCTTGATTGCCATGGAGGATTATGAAGGAGCCCTTAGGGATATTCGGGCAATTTTGACCTTGGATCCAAATTATATGATGTTTTATGGGCATATGCATGGTGAACACTTGGTAGAACTTCTCAGTCCTGTTGTTCAACAGTGGTGCCAGGCTGATTGTTGGATGCAGTTGTATGATCGGTGGTCCTCTGTTGATGATATTGGTTCCTTGGCTGTTGTCCACCAAATGTTAGCAAATGATCCGGGAAAAAGTCTTCTACGTTTTCGACAATCTCTCCTTTTGTTACGGTTGAATTGTCCAAAGGCTGCAATGCGTAGTTTGCGGATGGCTAGAAATCATTCTTCTTCTGACCATGAAAGACTTGTATATGAAGGATGGATATTGTATGACACTGGTCATCGTGAAGAAGCATTAGCAAAGGCTGAGGAATCCATTTCAATTCAAAGATCATTTGAAGCTTACTTTCTCAAAGCTTATGCACTGGCTGACTCAAATCTTGATTCAGAGTCTTCTAAGTATGTGATTCATCTCTTAGAGGAAGCTCTTAGATGCCCTTCAGATGGCCTTCGGAAAGGACAAGCACTGAATAATCTAGGGAGTGTGTATGTAGACTGTGACAAACTAGACCTTGCCGCTGACTGCTACATGAATGCCCTCAACATCAAGCATACGCGAGCACATCAAGGGTTGGCACGTGTATATCATCTTAAAAACCATCGCAAAGCAGCATATGATGAGATGACAAAGCTAATAGAAAAGGCTCGAAGTAATGCATCAGCATATGAGAAACGTTCAGAATATTGTGATCGTGAGATGGCAAAGAGTGATCTTAGTATGGCATCACAGTTGGATCCTCTCAGGACTTATCCTTACAGATATAGGGCAGCAGTTTTGATGGATGATCACAAGGAAGCTGAGGCAATAGCAGAGCTTTCAAGAGCCATTGATTTTAAGCCAGATTTACAATTATTACATCTTCGAGCAGCATTTTATGACTCAATGAGTGATTATTTTTCTGCAGTTCGGGACTGTGAAGCAGGTCTCTGTCTTGATCCTAATAATAGTGAAATTCTTGATCTTTGTAATAAAGCACGAGAGCATAATAGAGAACAAAAGTGGTAG 2868 0.4446 MQHNIFQTMRSMKIMDGCRGTQVYAINPSSGTGSGLGEKLFQQLHDHFKAQTLRTKSNRNFQTPNSTPPSEASFSDGSLLPYGLPMTDLLEPKIEPSLMSVDFVETLASVYRRAEERPQFERTEVFLEQCTIFRGLADPKLFRRSLRAARQHATNVHVKVVLAAWLRHERREDELIGSSSMDCSGRNLECPRASLEPGYDPESVFDHCACTRACARDYDSYDGNSEMTLEVDDEQGSISEEEDGDMSFIVGEDEIRCRRFNIASLSRPFKTMLYGEFIESRREKINFSQNCFSVEALTAAEEFSRSQRLSHLEPKVVLELLSLANRFCCEEMKHACDSHLAFLVCDIDDALLLVDYGLEETAYLLVAACLQVFLRELPGSMQSSSVMKIFCSPEGRDRLAMAGHASFVLYYFLSQIAMEEEMRSNTTVMLLERLVECANDGWEKQIAFHQLGVVMLERKEYKDAQHWFELAVEAGHVYSLVGVARAKYKRGHTYSAYKLMNSLISDHKPVGWMYQERSLYCVGKEKQMDLLSATELDPTLSFPYKFRAVSLLEENKIEPAIAEINKVIGFKVSPDCLELRAWFLIAMEDYEGALRDIRAILTLDPNYMMFYGHMHGEHLVELLSPVVQQWCQADCWMQLYDRWSSVDDIGSLAVVHQMLANDPGKSLLRFRQSLLLLRLNCPKAAMRSLRMARNHSSSDHERLVYEGWILYDTGHREEALAKAEESISIQRSFEAYFLKAYALADSNLDSESSKYVIHLLEEALRCPSDGLRKGQALNNLGSVYVDCDKLDLAADCYMNALNIKHTRAHQGLARVYHLKNHRKAAYDEMTKLIEKARSNASAYEKRSEYCDREMAKSDLSMASQLDPLRTYPYRYRAAVLMDDHKEAEAIAELSRAIDFKPDLQLLHLRAAFYDSMSDYFSAVRDCEAGLCLDPNNSEILDLCNKAREHNREQKW 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01019 955 Gene3D Tetratricopeptide repeat domain 836 954 IPR011990 GO:0005515
Spst4g01019 955 SUPERFAMILY TPR-like 447 611 IPR011990 GO:0005515
Spst4g01019 955 MobiDBLite consensus disorder prediction 54 75 - -
Spst4g01019 955 PANTHER ETO1-RELATED 7 953 IPR044631 GO:0010105
Spst4g01019 955 Gene3D Tetratricopeptide repeat domain 668 835 IPR011990 GO:0005515
Spst4g01019 955 ProSiteProfiles TPR repeat profile. 774 807 IPR019734 GO:0005515
Spst4g01019 955 SMART tpr_5 574 607 IPR019734 GO:0005515
Spst4g01019 955 SMART tpr_5 700 733 IPR019734 GO:0005515
Spst4g01019 955 SMART tpr_5 774 807 IPR019734 GO:0005515
Spst4g01019 955 SMART tpr_5 903 936 IPR019734 GO:0005515
Spst4g01019 955 SUPERFAMILY TPR-like 760 939 IPR011990 GO:0005515
Spst4g01019 955 Gene3D Tetratricopeptide repeat domain 409 611 IPR011990 GO:0005515
Spst4g01019 955 Gene3D Potassium Channel Kv1.1; Chain A 235 384 IPR011333 -
Spst4g01019 955 SUPERFAMILY TPR-like 577 753 IPR011990 GO:0005515
Spst4g01019 955 Coils Coil 826 846 - -
Spst4g01019 955 MobiDBLite consensus disorder prediction 54 74 - -
Spst4g01019 955 SUPERFAMILY POZ domain 241 340 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01019 Spst-Chr4 42186900 42190382 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01019 - - gmx:100799641 1668.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00779 1 10110405 10115052 Spst4g01019 4 42186900 42190382 PCT