Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu10g0799 . . Adu02g02185 Aed2g0922 . Ahy12g2286 Ahy2g1970 Aip02g02561 . . . . . . . . . . . . . . . . . Gso3g0249 . . . . . . . . . . . . . Mal7g0847 . . . Mtr4g0747 . . . Psa7g5458 . . . . . Ssu4g2552 Sto1g1760 . . Tsu06g00709 . . . . . .
Pvu10g0800 . . Adu02g02186 . . . Ahy2g1971 Aip02g02563 . Amo12g2621 Amo02g2690 . . . . . . Cca01g02066 . . . . . . . Gso3g0247 . . . . . . . . . . . . Lja3g3441 Mal7g0846 Mepo2g00786 . . Mtr4g0746 . . . Psa7g5460 . . . . . Ssu4g2553 . Tpr4g0996 . . . . . . . .
Pvu10g0801 . . Adu02g02188 Aed2g0919 . Ahy12g2288 Ahy2g1974 Aip02g02565 . Amo12g2622 . . . . . . . . . . . . . . . Gso3g0246 . . . . . . . . . . . . Lja3g3442 . . . . Mtr4g0745 . . . Psa7g5461 . . . . . Ssu4g2555 Sto1g1759 . . . . . . . . .
Pvu10g0802 . . Adu02g02189 Aed2g0916 Aev02g1994 Ahy12g2289 Ahy2g1975 Aip02g02568 . Amo12g2623 Amo02g2688 . . . . . Car06g02760 Cca01g02069 . . . . . . . Gso3g0243 Lal14g0843 . . Lan12g0162 . . . . . . . . Lja3g3443 Mal7g0844 . . . Mtr4g0744 . Phco1g01011 . Psa7g5462 Pste6g00057 Pumo7g01096 . . Spst4g01616 Ssu4g2557 Sto1g1758 Tpr4g0995 . . . . . . . .
Pvu10g0803 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Pste6g00082 . . . . . . . . . . . . . . .
Pvu10g0804 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0805 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Pste6g00082 . . . . . . . . . . . . . . .
Pvu10g0806 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0807 . . . . . . . . . Amo12g2625 . Apr10g0878 Arst2g02817 . . . . . . Dod07g1716 . . . Gma01g01398 Gso1g1158 . . . Lal19g0258 . Lan1g0735 . . . . . . . . . . . . . . . . . Pste6g00085 . . . . . . . . . . . Vimu9g00710 . . .
Pvu10g0808 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 2483 of 2800 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Pvu Pvu10g0799 Chr10 24371666 24372274 -
Adu Adu02g02185 Chr02 86149499 86152296 +
Aed Aed2g0922 Chr2 7172681 7175581 +
Ahy Ahy12g2286 Chr12 110052260 110054722 -
Ahy Ahy2g1970 Chr2 94268213 94270131 +
Aip Aip02g02561 Chr02 100249592 100251548 +
Gso Gso3g0249 Chr3 3490073 3492636 +
Mal Mal7g0847 Chr7 22765396 22773359 -
Mtr Mtr4g0747 Chr4 9477704 9484748 -
Psa Psa7g5458 Chr7 469499227 469500993 +
Ssu Ssu4g2552 Chr4 64663150 64671291 +
Sto Sto1g1760 Chr1 25745361 25750394 -
Tsu Tsu06g00709 Chr06 6142857 6199304 +
Pvu Pvu10g0800 Chr10 24570066 24571983 +
Adu Adu02g02186 Chr02 86173377 86175973 -
Ahy Ahy2g1971 Chr2 94276040 94278843 -
Aip Aip02g02563 Chr02 100272413 100274672 -
Amo Amo12g2621 Chr12 110672461 110676934 -
Amo Amo02g2690 Chr02 83666478 83668705 -
Cca Cca01g02066 Chr01 47898564 47900686 +
Gso Gso3g0247 Chr3 3471353 3474128 +
Lja Lja3g3441 Chr3 67967394 67969059 -
Mal Mal7g0846 Chr7 22759675 22762427 +
Mepo Mepo2g00786 Chr2 9538538 9541318 -
Mtr Mtr4g0746 Chr4 9464098 9467400 +
Psa Psa7g5460 Chr7 469589585 469592017 -
Ssu Ssu4g2553 Chr4 64730527 64732788 -
Tpr Tpr4g0996 Chr4 9554321 9558784 -
Pvu Pvu10g0801 Chr10 24742850 24743464 -
Adu Adu02g02188 Chr02 86186982 86189181 -
Aed Aed2g0919 Chr2 7155515 7157655 +
Ahy Ahy12g2288 Chr12 110122916 110125074 -
Ahy Ahy2g1974 Chr2 94299864 94302384 -
Aip Aip02g02565 Chr02 100287286 100289522 -
Amo Amo12g2622 Chr12 110705593 110724199 +
Gso Gso3g0246 Chr3 3441313 3443609 +
Lja Lja3g3442 Chr3 67986904 67989222 -
Mtr Mtr4g0745 Chr4 9440809 9442718 -
Psa Psa7g5461 Chr7 469615135 469617151 -
Ssu Ssu4g2555 Chr4 64815468 64817622 -
Sto Sto1g1759 Chr1 25742964 25743590 -
Pvu Pvu10g0802 Chr10 24768312 24769278 -
Adu Adu02g02189 Chr02 86199552 86225711 -
Aed Aed2g0916 Chr2 7142406 7144763 +
Aev Aev02g1994 Chr02 21706401 21709024 -
Ahy Ahy12g2289 Chr12 110182263 110184087 -
Ahy Ahy2g1975 Chr2 94351600 94355365 -
Aip Aip02g02568 Chr02 100379337 100447173 -
Amo Amo12g2623 Chr12 110747340 110750120 -
Amo Amo02g2688 Chr02 83644031 83646307 +
Car Car06g02760 Chr06 38839109 38842274 +
Cca Cca01g02069 Chr01 47950319 47952894 +
Gso Gso3g0243 Chr3 3374862 3377245 +
Lal Lal14g0843 Chr14 10635638 10638127 -
Lan Lan12g0162 Chr12 2144334 2146755 +
Lja Lja3g3443 Chr3 67989274 67989973 -
Mal Mal7g0844 Chr7 22533727 22535518 -
Mtr Mtr4g0744 Chr4 9425889 9428756 -
Phco Phco1g01011 Chr1 10585476 10585733 -
Psa Psa7g5462 Chr7 469617610 469618740 -
Pste Pste6g00057 Chr6 171622 173846 -
Pumo Pumo7g01096 Chr7 20970987 20971883 +
Spst Spst4g01616 Chr4 55663879 55664775 -
Ssu Ssu4g2557 Chr4 64848428 64850758 -
Sto Sto1g1758 Chr1 25733878 25737231 -
Tpr Tpr4g0995 Chr4 9550963 9552952 -
Pvu Pvu10g0803 Chr10 24895615 24898253 -
Pste Pste6g00082 Chr6 244964 248191 -
Pvu Pvu10g0804 Chr10 24965168 24966535 +
Pvu Pvu10g0805 Chr10 25304310 25305611 -
Pste Pste6g00082 Chr6 244964 248191 -
Pvu Pvu10g0806 Chr10 25420998 25424356 -
Pvu Pvu10g0807 Chr10 25590146 25594919 -
Amo Amo12g2625 Chr12 110818200 110821532 -
Apr Apr10g0878 Chr10 21285202 21289710 +
Arst Arst2g02817 Chr2 85556482 85559983 +
Dod Dod07g1716 Chr07 45512659 45517682 +
Gma Gma01g01398 Chr01 48407066 48411648 +
Gso Gso1g1158 Chr1 46739083 46743774 +
Lal Lal19g0258 Chr19 2542945 2549900 -
Lan Lan1g0735 Chr1 17259022 17269895 +
Pste Pste6g00085 Chr6 258159 265883 -
Vimu Vimu9g00710 Chr9 10482338 10490438 -
Pvu Pvu10g0808 Chr10 25599179 25599629 -