Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02471 aTGCAGCATAACATTTTTGCAACAATGCGTAGTTTTAAGATTATGGATGGGTGCAAAGGTTCTCAAGTTTATTCTCTCCACCACCCTTCTGCCGGCGGAGGAAGCACCGGAATCGGAGAAAAGCTTCTCCAACAACTCCATGACCATATTAAAACTCAAACATTTCGTACAAAATCTGGTCATCATTTTCAATCATCAAATCAAACACATTCTGAGGTTGTTTCTGAGGGTTCTCTTCTTCCTTATGGGCTTCCTATGACAGACCTTCTTGAGCCCAAAATTGAGCCCATTTTAAAGCCTGTTGATTTCGTCGAAACCCTCGCCGGACTTTATAATAAGATGGATAATTGTTTAGAGACTGATAGGTGTGAGGTTTATTTGGAGCATTGCTCCTTTTTCCGCGGCTCATCCGATGCTAAATTGTTTCGCCGGAGCCTGAGGTCAGCACGACAACATGCTATGGATGTCCATACCAAAGTCGTGCTGGCTTCCTGGCTCCGGTATGAAAGGAGGGAGGATGAGCTGGTTGGCTCGTCTTCGATGGATTGTTGTGGGAGGAATATTGAATGCCCTAAGGCTACTTTGGTGGCGAATGGGTATGATCCCCAATTGGTTTATGATCGATGTTGTTGTTGTCGTGATCGTGGggaagaagaggaggaggagaaggaggaTTTTATGAAGTTGGTTGATGATCAAGAATGTTCTACCTCGGAAGAGGATGAAGCAGACGGGGATATGTCGTTTTGTATTGGTGATGATGAAATTAGGTGTGGTAGATTCAATATGGCTTCGCTTTCGAGGCCGTTTAAGACAATGTTGTATGGCGAATTCATTGAATCGAGGAGGGAGAAGATAAATTTTTCGAAGAATGGGGTTTCTGTTGAGGCAATGAGGGCTGCTGAAGTTTTTAGTAGGACTAAAAGTTTGACCTCGATTGAACCTAATGTGGTTTTGGAGTTGCTCTCTCTAGCGAACCGGTTTTGTTGCGAGGAGATGAAGTGTGCCTGCGACACTCATTTGGCATCGCTTGTTTGTGATTTAGAAGATGCCTCATTGCTCGTCGAGTATGGACTTGTGGAGACTGCGTACCTTTTGGTTGCGGCTTGCTTGCAGGTGTTTCTGAGGGAGTTACCCGGTTCAATGCAGTGTTCGAGTTTTGTGAAATTGTTTTGTAGTCCTGAGGGTAGGGATAGGCTGGCTATGGCGGGGCACGCGTCGTTTGTGCTTTATTATTTCTTGAGTCAAGTTGCCATGGAGGAAGAGATGAGGTCGAACACAACCGTGATGCTGTTGGAGAGATTAGTAGAGTGCGCGAAAGACGGATGGGAGAAACAACTTGCATTTCACCAATTAGGCGTTGTTATGTTCGAGAGAAAAGAATACAAAGATGCACAACATTGGTTTGAGTCGGCGGTAGACGCAGGGCATGTTTATTCGTTAGTCGGAGTTGCAAGGGCAAAATATAGACGCGGTCATATGTTTTCGGCGTATAAGCTGATGAACTCGCTTATTAACAATTATAAGCCTGTAGGATGGATGTATCAGGAAAGATCTTTGTATTGTCATGGGAAGGAGAAAATGATGGACTTGATATCTGCAACCGAATTAGATCCAACACTTTCGTTTCCTTACAAATACCGAGCCGTTTCTTTGCTTGAGGAGAGCAGGATTGGACCTGCCATTGCAGAAATAAACAAAATAATTGGTTTCAAAGTTTCTTCTGACTGCCTTGAATTGAGGGCTTGGTTTTTGATTGCAATGGAGGATTACGAAGGAGCGCTAAGAGATGTTCGGGCGATTTTGACATTGGATCCTAATTATATGATGTTCTATGGGAATATGCACGGTAATCACTTGGTAGAATTACTCAGTCCTGTTGTTCAGCAGTGCAATCAGGCTGATTGCTGGATGCAATTGTACGACCGGTGGTCCTCTGTTGATGATATCGGTTCGTTGGCTGTTGTACACCAGATGTTGGAAAATGATCCAGGGAAAAGTCTTCTGCGTTTTCGACAATCTCTCCTTTTGTTGCGGCTAAATTGTCAAAAGGCAGCGATGCGTAGTTTGCGGCTGGCTAGAAATTATTCTACTTCTGACCATGAAAGGCTTGTCTATGAAGGATGGATATTGTATGACACCGGTCACCGTGAAGAAGCGTTGGCAAAGGCCGAGGAGTCTATTTCTATTCAAAGATCATTTGAAGCTTACTTCCTCAAAGCTTATGTGTTAGCCGACTCAAGTCTCGATTCCGAGTCTTCAAAGTATGTTATCCATCTCTTGGAGGAAGCTCTTAGATGTCCTTCAGATGGTCTTCGGAAAGGACAAGCACTAAATAATCTTGGGAGCGTCTACGTAGATTGTGATAAGCTGGACCTTGCAGCCGACTGCTACATGAATGCACTCAACATCAAGCATACGCGAGCACATCAAGGATTGGCACGTGTATATCATCTTAAAAATCACCGCAAAGTTGCATACGATGAGATGACAAAGCTAATAGAAAAGGCTTGGAACAATGCATCGGCTTATGAGAAACGGTCGGAGTATTGTGATCGTGACATGGCAAAGAGTGATCTAAGTATGGCAACACAGTTGGATCCTCTAAGGACTTATCCTTACAGATATAGGGCAGCAGTTTTAATGGATGATCACAAGGAAGCCGAAGCAATCACAGAGCTTTCAAGAGCCATCGAATTCAAGCCGGATCTACAACTGTTACATCTTAGAGCAGCCTTTTACGATTCAATGAGCGATTACGCTTCAACTGTTCGAGACTGTGAAGCAGCCCTTTGTCTTGATCCTAACCATGCCGAGACGCTTGAGCTTTGTAAAAAAGCACGAGAACGGATTAACGATCAAAAGTGA 2868 0.4351 MQHNIFATMRSFKIMDGCKGSQVYSLHHPSAGGGSTGIGEKLLQQLHDHIKTQTFRTKSGHHFQSSNQTHSEVVSEGSLLPYGLPMTDLLEPKIEPILKPVDFVETLAGLYNKMDNCLETDRCEVYLEHCSFFRGSSDAKLFRRSLRSARQHAMDVHTKVVLASWLRYERREDELVGSSSMDCCGRNIECPKATLVANGYDPQLVYDRCCCCRDRGEEEEEEKEDFMKLVDDQECSTSEEDEADGDMSFCIGDDEIRCGRFNMASLSRPFKTMLYGEFIESRREKINFSKNGVSVEAMRAAEVFSRTKSLTSIEPNVVLELLSLANRFCCEEMKCACDTHLASLVCDLEDASLLVEYGLVETAYLLVAACLQVFLRELPGSMQCSSFVKLFCSPEGRDRLAMAGHASFVLYYFLSQVAMEEEMRSNTTVMLLERLVECAKDGWEKQLAFHQLGVVMFERKEYKDAQHWFESAVDAGHVYSLVGVARAKYRRGHMFSAYKLMNSLINNYKPVGWMYQERSLYCHGKEKMMDLISATELDPTLSFPYKYRAVSLLEESRIGPAIAEINKIIGFKVSSDCLELRAWFLIAMEDYEGALRDVRAILTLDPNYMMFYGNMHGNHLVELLSPVVQQCNQADCWMQLYDRWSSVDDIGSLAVVHQMLENDPGKSLLRFRQSLLLLRLNCQKAAMRSLRLARNYSTSDHERLVYEGWILYDTGHREEALAKAEESISIQRSFEAYFLKAYVLADSSLDSESSKYVIHLLEEALRCPSDGLRKGQALNNLGSVYVDCDKLDLAADCYMNALNIKHTRAHQGLARVYHLKNHRKVAYDEMTKLIEKAWNNASAYEKRSEYCDRDMAKSDLSMATQLDPLRTYPYRYRAAVLMDDHKEAEAITELSRAIEFKPDLQLLHLRAAFYDSMSDYASTVRDCEAALCLDPNHAETLELCKKARERINDQK 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02471 955 Gene3D Tetratricopeptide repeat domain 669 837 IPR011990 GO:0005515
Car06g02471 955 Gene3D Tetratricopeptide repeat domain 851 955 IPR011990 GO:0005515
Car06g02471 955 ProSiteProfiles TPR repeat profile. 775 808 IPR019734 GO:0005515
Car06g02471 955 PANTHER ETO1-RELATED 1 954 IPR044631 GO:0010105
Car06g02471 955 SUPERFAMILY TPR-like 761 943 IPR011990 GO:0005515
Car06g02471 955 SUPERFAMILY POZ domain 245 342 IPR011333 -
Car06g02471 955 SMART tpr_5 905 937 IPR019734 GO:0005515
Car06g02471 955 SMART tpr_5 871 904 IPR019734 GO:0005515
Car06g02471 955 SMART tpr_5 701 734 IPR019734 GO:0005515
Car06g02471 955 SMART tpr_5 775 808 IPR019734 GO:0005515
Car06g02471 955 SMART tpr_5 575 608 IPR019734 GO:0005515
Car06g02471 955 Gene3D Tetratricopeptide repeat domain 410 643 IPR011990 GO:0005515
Car06g02471 955 SUPERFAMILY TPR-like 448 804 IPR011990 GO:0005515
Car06g02471 955 Gene3D Potassium Channel Kv1.1; Chain A 229 383 IPR011333 -
Car06g02471 955 PANTHER ETHYLENE-OVERPRODUCTION PROTEIN 1 1 954 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g02471 Car-Chr6 27779931 27784662 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g02471 - - gmx:100799641 1548.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g02471 06 27779931 27784662 Car06g02471 06 27779931 27784662 ECH
Car03g01313 03 58056885 58065793 Car06g02471 06 27779931 27784662 PCT