Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00998 ATGGCTACCAACATCGGATCCCTCGACACATCTAAGCCCCCCAGCAATGACATCGGCTGTCCCCCAAACGGTTCTGTTTCCTCCGTCACGAACTCCGGCGTCTCCTCCTCCTCTGAGGCCACGCTTGGCCGCCACCTCGCGCGCCGCCTCGTGCAGGTGGGGGTCACGGACATTTTCTCCGTGCCAGGTGACTTTAACCTCACCCTTCTTGACCACCTCATCGCGGAGCCCCAACTCACCAATATCGGATGCTGCAACGAGCTCAACGCTGGGTACGCCGCCGACGGCTACGCTCGGTGCCGGGGAGTGGGCGCGTGCGTGGTCACGTTCACCGTGGGGGGACTGAGTGTAATCAACGCAATCGCTGGCGCTTACAGTGAGAACCTTCCGCTGGTTTGTATCGTGGGTGGGCCTAATACCAACGACTTCGGCACGAACAGGATCTTGCATCACACCATTGGGTTGTCGGATTTCAGCCAAGAGCTCAGGTGTTTCCAAACTGTTACCTGCTACCAGGCTGTGGTCAATAACATAGAAGACGCTCATGAAATGATTGACACTGCGATCTCAACCTGTCTGAAAGAAAGCAAGCCCGTTTACATAAGCATAAGCTGCAACTTACCTGGCATTCCTCACCCCACTTTCAGTCGTGAGCCAGTTCCATTTTCTCTGTCCCCCAGATTGAGTAACAAGCTAGGGTTGGAGGCAGCAGTGGAGGCAGCAGTAGCGTTCCTAAACAAGGCAGTGAAACCTGTAATGGTGGGTGGTCCAAAACTGAGGGTGGCTAAGGCATGTGATGCTTTTGTTGAGCTTGCTGATGCATGTGGTTATCCATTTGCTGTCATGCCATCAGCCAAGGGACTAGTCCCTGAGTACCACCCCCACTTCATTGGCACATTCTGGGGTGCTGTGAGCACTTCTTTCTGTGCTGAGATTGTGGAATCTGCTGATGCATACTTGTTTGCTGGCCCCATTTTCAATGACTACAGCTCTGTAGGGTACTCTCTCCTTCTCAAGAAGGAGAAGGCCATCATCGTGCAGCCGAACCGGGTAGTGATCTCAAATGGACCTGCATTTGGGTGTGTTCTCATGAAGGACTTCCTCAGTGAACTTGGAAAGCGTCTCAAGCACAACAACACGGCATATGAAAACTATGCCAGGATATTCGTCCCTGATGGAAAACCTCTGAAGGCTGAACCAAAAGAGCCTTTGAGGGTTAATGTGCTGTTTAAGCACATTCAAGACATGTTGTCTGGTGATACTGCTGTGATTGCTGAGACAGGGGACTCTTGGTTTAACTGCCAAAAGCTGAAGTTGCCAAAAGATTGTGGGTACGAGTTCCAAATGCAATATGGTTCTATTGGATGGTCAGTTGGTGCAACTCTTGGTTATGCTCAGGCTGTTCCTAAGAAAAGAGTGATTTCTTGCATTGGTGATGGAAGCTTTCAGGTGACAGCTCAGGATATCTCCACCATGATACGAAATGAGCAGAAGTCCATTATCTTCCTGATAAACAATGGTGGATACACCATTGAAGTTGAAATTCATGATGGGCCATACAATGTGATTAAGAACTGGAACTACACTGCCTTAGTTGATGCAATCCACAATGGTGAAGGAAATTGCTGGACCACTAAGGTCACATGTGAAGAGGAACTTACTGAAGCAATTGAGACAGCAACAGGAGACAAGAAAGATTGCTTGTGCTTCATTGAGGTGATTGTTCACAAGGATGATACAAGCAAAGAATTGCTTGAATGGGGCTCTAGGGTCTGTGCTGCAAATAGTCGTCCTCCTAATCCTCAGTGA 1809 0.497 MATNIGSLDTSKPPSNDIGCPPNGSVSSVTNSGVSSSSEATLGRHLARRLVQVGVTDIFSVPGDFNLTLLDHLIAEPQLTNIGCCNELNAGYAADGYARCRGVGACVVTFTVGGLSVINAIAGAYSENLPLVCIVGGPNTNDFGTNRILHHTIGLSDFSQELRCFQTVTCYQAVVNNIEDAHEMIDTAISTCLKESKPVYISISCNLPGIPHPTFSREPVPFSLSPRLSNKLGLEAAVEAAVAFLNKAVKPVMVGGPKLRVAKACDAFVELADACGYPFAVMPSAKGLVPEYHPHFIGTFWGAVSTSFCAEIVESADAYLFAGPIFNDYSSVGYSLLLKKEKAIIVQPNRVVISNGPAFGCVLMKDFLSELGKRLKHNNTAYENYARIFVPDGKPLKAEPKEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKLKLPKDCGYEFQMQYGSIGWSVGATLGYAQAVPKKRVISCIGDGSFQVTAQDISTMIRNEQKSIIFLINNGGYTIEVEIHDGPYNVIKNWNYTALVDAIHNGEGNCWTTKVTCEEELTEAIETATGDKKDCLCFIEVIVHKDDTSKELLEWGSRVCAANSRPPNPQ 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00998 602 CDD TPP_PDC_IPDC 403 585 IPR047214 -
Spst4g00998 602 Gene3D - 395 587 - -
Spst4g00998 602 MobiDBLite consensus disorder prediction 1 32 - -
Spst4g00998 602 Gene3D - 37 213 - -
Spst4g00998 602 FunFam Pyruvate decarboxylase 1 397 584 - -
Spst4g00998 602 PIRSF Pyruvt_ip_decrb 35 597 IPR012110 GO:0016831
Spst4g00998 602 Gene3D - 228 390 - -
Spst4g00998 602 FunFam pyruvate decarboxylase 1 38 214 - -
Spst4g00998 602 PANTHER PYRUVATE DECARBOXYLASE 35 597 IPR012110 GO:0016831
Spst4g00998 602 Pfam Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 41 208 IPR012001 GO:0030976
Spst4g00998 602 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 403 596 IPR029061 -
Spst4g00998 602 FunFam Pyruvate decarboxylase 1 228 390 - -
Spst4g00998 602 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 41 215 IPR029061 -
Spst4g00998 602 SUPERFAMILY DHS-like NAD/FAD-binding domain 233 381 IPR029035 -
Spst4g00998 602 Pfam Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 448 573 IPR011766 GO:0003824|GO:0030976
Spst4g00998 602 CDD TPP_PYR_PDC_IPDC_like 44 205 IPR047213 -
Spst4g00998 602 Pfam Thiamine pyrophosphate enzyme, central domain 238 353 IPR012000 GO:0000287|GO:0030976
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00998 Spst-Chr4 41777687 41781407 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00998 K01568 - gmx:100787315 1134.4