Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02462 ATGTCTCGAAGATATGATAGCCGCACAACAATCTTCTCCCCAGAAGGACGTCTTTACCAAGTTGAGTATGCAATGGAGGCCATCGGGAACGCTGGTACTGCAATAGGAATCTTATCAAAAGACGGAGTTGTCCTAGTTGGTGAAAAGAAGGTAACGTCTAAGCTGCTACAAACCTCAACATCAACCGAGAAAATGTACAAAATCGATGACCACGTTGCTTGTGCTGTCGCCGGAATAATGTCCGACGCCAACATCCTAATCAACACAGCCAGAGTCCAAGCACAACGCTACACTTTCGCATATCAAGAGCCAATGCCAGTTGAACAGTTAGTTCAATCTCTCTGCGATACTAAACAAGGTTACACCCAATTCGGCGGTCTCCGACCATTCGGAGTCTCGTTCCTGTTTGCAGGATGGGACAAAAACTTCGGCTTTCAGCTTTACATGAGTGACCCGAGTGGAAATTACGGTGGCTGGAAAGCTGGAGCTATCGGTGCAAACAACCAAGCTGCACAGTCGATACTAAAACAGGACTATAAAGACGATATCAGTAGAGAAGAAGCTGTGCAACTTGCATTGAAGGTTTTAAGTAAAACTATGGATAGTACAAGTCTTACGTCGGATAAACTTGAACTTGCAGAGGTTTATCTTTCACCTTCTGGAAAAGTTAAGTATGATGTTTGCTCACCAGAGTCTCTTACTAAGCTTTTAGTGAAATCTGGTGTCACTCAACCTGCAACAGACACTGCTTAG 753 0.4436 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGTAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTFAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNFGFQLYMSDPSGNYGGWKAGAIGANNQAAQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVYLSPSGKVKYDVCSPESLTKLLVKSGVTQPATDTA 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02462 250 CDD proteasome_alpha_type_4 3 215 - -
Car06g02462 250 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 4 219 IPR029055 -
Car06g02462 250 Pfam Proteasome subunit A N-terminal signature 5 27 IPR000426 GO:0006511|GO:0019773
Car06g02462 250 ProSiteProfiles Proteasome alpha-type subunit profile. 20 237 IPR023332 -
Car06g02462 250 PANTHER PROTEASOME SUBUNIT ALPHA TYPE-4-A 1 249 IPR034647 GO:0019773
Car06g02462 250 ProSitePatterns Proteasome alpha-type subunits signature. 5 27 IPR000426 GO:0006511|GO:0019773
Car06g02462 250 Pfam Proteasome subunit 30 214 IPR001353 GO:0005839|GO:0051603
Car06g02462 250 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 1 249 IPR029055 -
Car06g02462 250 SMART Proteasome_A_N_2 5 27 IPR000426 GO:0006511|GO:0019773
Car06g02462 250 PANTHER PROTEASOME SUBUNIT ALPHA/BETA 1 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g02462 Car-Chr6 27544383 27547438 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g02462 K02728 - gmx:102662733 479.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g01327 03 58191704 58198673 Car06g02462 06 27544383 27547438 PCT