Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g2112 ATGTCGCGAAGATATGATAGCCGTACAACAATCTTCTCCCCTGAAGGACGTCTTTATCAAGTGGAGTATGCAATGGAGGCTATTGGAAATGCTGGTTCTGCCATAGGGATCTTATCAAAAGATGGTGTCGTGTTGGTTGGCGAAAAGAAGGTAACATCCAAACTGCTGCAAACCTCTTCATCCACTGAGAAAATGTACAAGATTGATGATCATGTTGCATGTGCTGTTGCCGGGATAATGTCGGATGCGAACATCCTCATCAATACAGCTAGGGTCCAAGCACAACGCTACACATATGCCTACCAAGAGCCCATGCCTGTTGAACAGTTGGTTCAGTCTCTTTGTGATACTAAGCAAGGATACACCCAATTCGGTGGTCTTCGACCATTTGGGGTCTCATTCCTGTTTGCAGGTTGGGACAAAAACTTTGGCTTTCAACTCTACATGAGTGATCCTAGTGGAAACTATGGCGGTTGGAAAGCAGGAGCTATTGGTGCAAACAACCAGGCGGCTCAGTCAATACTGAAACAGGACTACAAGGATGACATTACGAGAGAAGAAGCCGTGCAACTTGCATTGAAGGTATTAAGCAAGACTATGGACAGCACAAGCTTGACCTCAGAGAAGATTGAATTAGCAGAGGTTTTCCTCTCACCTTCTGGAAAGGTCAAGTATGAAGTTTGCTCCCCAGAGGCATTGAATAAACTATTGGTGAAGTTTGGGGTGACTCAACCAGCAACAGACACTGCCTAG 753 0.4542 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSSSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNFGFQLYMSDPSGNYGGWKAGAIGANNQAAQSILKQDYKDDITREEAVQLALKVLSKTMDSTSLTSEKIELAEVFLSPSGKVKYEVCSPEALNKLLVKFGVTQPATDTA* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g2112 250 CDD proteasome_alpha_type_4 3 215 - -
Ahy12g2112 250 ProSiteProfiles Proteasome alpha-type subunit profile. 20 237 IPR023332 -
Ahy12g2112 250 Pfam Proteasome subunit 30 214 IPR001353 GO:0005839|GO:0051603
Ahy12g2112 250 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 4 235 IPR029055 -
Ahy12g2112 250 PANTHER PROTEASOME SUBUNIT ALPHA/BETA 1 249 - -
Ahy12g2112 250 ProSitePatterns Proteasome alpha-type subunits signature. 5 27 IPR000426 GO:0006511|GO:0019773
Ahy12g2112 250 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 1 249 IPR029055 -
Ahy12g2112 250 PANTHER PROTEASOME SUBUNIT ALPHA TYPE-4-A 1 249 IPR034647 GO:0019773
Ahy12g2112 250 SMART Proteasome_A_N_2 5 27 IPR000426 GO:0006511|GO:0019773
Ahy12g2112 250 Pfam Proteasome subunit A N-terminal signature 5 27 IPR000426 GO:0006511|GO:0019773
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g2112 Ahy-Chr12 106151773 106154671 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g2112 K02728 - gmx:100802854 479.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g2112 12 106151773 106154671 Ahy2g1844 2 91648094 91652558 hybridization
Ahy14g1973 14 111947303 111950141 Ahy12g2112 12 106151773 106154671 PCT
Ahy4g1742 4 102808350 102811156 Ahy12g2112 12 106151773 106154671 PCT
Ahy12g2112 12 106151773 106154671 Ahy14g1973 14 111947303 111950141 PCT
Ahy12g2112 12 106151773 106154671 Ahy4g1742 4 102808350 102811156 PCT