Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2425 ATGGCAAAGGCACATCAAATAGTGCTAGGGAGCACTTGGGGgatcaaaaacatttttcaatctCTTGTGGCCATCTTAACCACTACTCTAGTTGTCACTGCCATTTATCTAACACAGGAAGGAGAACAATGGTCTCATGAAAGGAATAAGTTACATTCATTATCAAAATGTAACTTGTTTTCTGGTAAGTGGGTTTTTGATAATGAATCATATCCACTCTACAGGGAGCAGCAGTGCACGTACATGTCTGATCAATTGGCTTGTGAGAAGTTTGGAAGGAAGGACCTAAGCTATCAGAATTGGAGGTGGAAGCCCCACCAATGTGACTTACCCAGGTTCAATGCCACAGCATTACTTGAAAGGCTAAGGAACAAGAGGATGGTATTTGTGGGGGATTCACTCAACAGAGGCCAATGGGTTTCAATGGTTTGCCTTGTTGAATCTTCTCTGCCCCCAACTCTCAAATCCATGCGGACTATTGCAAATGGGTCACTAAGCATTTTCAAGGCCGAAGAATACAATGCAACCATCGAGTTCTATTGGGCCCCATTGCTGGTAGAATCAAACTCGGATGATCCTGTGAACCATAGGGTACCAGAACGAACTGTGAGAGTCCAGGCCATTGAGAAACATGCCAGGCACTGGACTGATGCGGACATTCTGGTCTTCAACACTTTCCTCTGGTGGAGAAGGCGCGCAATGAACGTTCTGTGGGGTTCATTTGGAGACCCAAATGGGGTATACAAAAGGGTAGGAATGGTGCGAGTCTATGAGATGGGCCTGAGGACCTGGTCAGACTGGTTGGAAGTCCATATTAATCGTAACAAGACCCAGTTGTTTTTCGTTTCTATGTCACCAACTCACCAAAAggCTCATGATGGGGAGGAGTTAGGGGTGACAATTGTTACACAGAAACGGATCTAA 924 0.4437 MAKAHQIVLGSTWGIKNIFQSLVAILTTTLVVTAIYLTQEGEQWSHERNKLHSLSKCNLFSGKWVFDNESYPLYREQQCTYMSDQLACEKFGRKDLSYQNWRWKPHQCDLPRFNATALLERLRNKRMVFVGDSLNRGQWVSMVCLVESSLPPTLKSMRTIANGSLSIFKAEEYNATIEFYWAPLLVESNSDDPVNHRVPERTVRVQAIEKHARHWTDADILVFNTFLWWRRRAMNVLWGSFGDPNGVYKRVGMVRVYEMGLRTWSDWLEVHINRNKTQLFFVSMSPTHQKAHDGEELGVTIVTQKRI 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2425 307 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 110 293 IPR026057 GO:0016740
Ssu4g2425 307 PANTHER PMR5/CAS1P GDSL/SGNH-LIKE ACYL-ESTERASE FAMILY PROTEIN 5 295 - -
Ssu4g2425 307 Pfam PMR5 N terminal Domain 56 109 IPR025846 -
Ssu4g2425 307 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 5 295 IPR029962 GO:0016413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2425 Ssu-Chr4 60587612 60593437 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2425 - - gmx:100789678 569.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2425 4 60587612 60593437 Ssu4g2425 4 60587612 60593437 ECH
Ssu3g1050 3 24624767 24629066 Ssu4g2425 4 60587612 60593437 PCT