Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2427 ATGCAGAGATGGAAGTGGAACAGAAAGAAACCCCCCATTTTTCCTTTACTTGTGCTTATCTTACTGTTCTTCGTAGCCTTCTCAACCCTCCACAGTGAACACAGCATACCTCGAATCCATGAAAACCCAGATCATCTTCACAACCACCAACATGTTTCTTCAGCTACCTTTGTCAAACCTAACCTCTCTGGTCACCTCAAGCAAGCTCCAGAGGTTTTGGATAGATTCAGTAGATGCAACTCCACTATAGGGTATAGTGGCCGGAAAATTGCTTGGCTTGGTGATTCTTGGCAGTCTGGTCGCCGGAGAGTGAGGCCGGAAAGTTGTGATGTTTTTTCAGGCAAATGGGTGTTTGATAATGTTTCACATCCACTGTACAATGAGTCAGATTGTCCATACATGTCTGACCAATTGGCCTGTCACAAGCATGGAAGGTCTGATTTGGGGTACCAGTATTGGAGATGGCAACCACATAACTGCAATTTGAAGAGGTGGAATGTGAAAGAAATGTGGGAGAAGTTGAGAGATAAGAGGCTAATGTTTGTTGGAGATTCACTAAATAGAGGGCAATGGATATCTATGGTATGCTTGTTACAATCGGTAATTCCTGCTGATAAGAGATCAATGTCACCAAATGCCCATCTCACCATTTTCAGAGCAGAGGAGTACAATGCAACTGTGGAATTTCTCTGGGCTCCTCTTCTTGTTGAATCTAATTCTGATGATCCAGTAAATCACAGACTAGATGAACGGATAATTCGTCCTGATACGGTTCTTAGGCATGCATCACTATGGGAACATGCTGATATACTTGTTTTTAACACATACTTGTGGTGGAGACAAGGCCCAGTCAAGCTATTATGGACCGCTGAAGAAAATGGAGCTTGTGAAGAATTGGATGGGCAAGGAGCCATGGAATTGGCCATGGGAGCATGGGCAGATTGGGTATCTTCTAAAGTTGATCCCCTCAAGAAGCATGTCTTTTTTGTGACCATGTCACCAACTCATCTCTGGAGCCGAGAGTGGAAACCAGGAAGTGAGGGAAACTGTTATGGGGAGAAGTACCCCATTGACTTTGAGGGCTACTGGGGAAGTGGTTCGGATTTGCCTACAATGAGCACTCTGGAGAAGATCTTCAGCAATTTGAGTTCAAAAGTTTCTGTCCTCAACATTACTCAACTATCAGAGTATAGAAAGGATGGTCATCCTTCCATTTTTCGCAAATTTTGGGAGCCCCTTCGCCCAGAACAATTGTCAAATCCCCCATCTTACTCTGATTGCATACACTGGTGCTTGCCTGGGGTACCTGATGTGTGGAATGAGCTACTATTCCATTTTTTATAG 1344 0.4405 MQRWKWNRKKPPIFPLLVLILLFFVAFSTLHSEHSIPRIHENPDHLHNHQHVSSATFVKPNLSGHLKQAPEVLDRFSRCNSTIGYSGRKIAWLGDSWQSGRRRVRPESCDVFSGKWVFDNVSHPLYNESDCPYMSDQLACHKHGRSDLGYQYWRWQPHNCNLKRWNVKEMWEKLRDKRLMFVGDSLNRGQWISMVCLLQSVIPADKRSMSPNAHLTIFRAEEYNATVEFLWAPLLVESNSDDPVNHRLDERIIRPDTVLRHASLWEHADILVFNTYLWWRQGPVKLLWTAEENGACEELDGQGAMELAMGAWADWVSSKVDPLKKHVFFVTMSPTHLWSREWKPGSEGNCYGEKYPIDFEGYWGSGSDLPTMSTLEKIFSNLSSKVSVLNITQLSEYRKDGHPSIFRKFWEPLRPEQLSNPPSYSDCIHWCLPGVPDVWNELLFHFL 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2427 447 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 164 445 IPR026057 GO:0016740
Ssu4g2427 447 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 4 447 IPR029962 GO:0016413
Ssu4g2427 447 Pfam PMR5 N terminal Domain 108 161 IPR025846 -
Ssu4g2427 447 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 35 4 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2427 Ssu-Chr4 60615821 60619918 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2427 - - gmx:100789158 896.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2427 4 60615821 60619918 Ssu4g2427 4 60615821 60619918 ECH