Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0783 ATGTCTCGAAGATATGATAGCCGTACAACAATCTTCTCCCCCGAAGGACGTCTTTACCAAGTAGAATATGCAATGGAGGCTATTGGGAATGCTGGTACCGCAATAGGGATCTTATCGAAAGATGGGGTTGTGCTGGTTGGTGAAAAGAAGGTTACGTCCAAGCTGCTGCAAACCTCGACTTCCACTGAGAAGATGTACAAGATTGATGATCATGTTGCATGCGCAGTGGCTGGGATAATGTCTGATGCCAACATCCTAATCAATACAGCTAGGGTCCAAGCACAACGATGGGACAAAAATTTTGGCTTTCAGCTTTACATGAGTGACCCTAGTGGAAATTATGGTGGTTGGAAAGCTGGAGCTATTGGTGCGAATAACCAGGCAGCACAGTCAATACTAAAACAGGACTACAAGGATGATATCACAAGAGAAGAAGCAGTGCAACTTGCATTGAAGGTTTTGAGTAAAACCATGGACAGCACAAGTCTGACCTCAGAAAAGCTTGAACTTGCAGAGGTTTATCTGTCACCATCTGGAAAAGTCAAGTATGAAGTTTGCTCACCAGAGTCCCTGACTAAGCTACTGGTTAAGTTTGGTGTGACCCAACCTGCAACCGACACTGCCTAG 627 0.4498 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGTAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRWDKNFGFQLYMSDPSGNYGGWKAGAIGANNQAAQSILKQDYKDDITREEAVQLALKVLSKTMDSTSLTSEKLELAEVYLSPSGKVKYEVCSPESLTKLLVKFGVTQPATDTA* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0783 208 Pfam Proteasome subunit A N-terminal signature 5 27 IPR000426 GO:0006511|GO:0019773
Apr10g0783 208 ProSitePatterns Proteasome alpha-type subunits signature. 5 27 IPR000426 GO:0006511|GO:0019773
Apr10g0783 208 PANTHER PROTEASOME SUBUNIT ALPHA TYPE-4-B-RELATED 1 207 IPR034647 GO:0019773
Apr10g0783 208 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 1 194 IPR029055 -
Apr10g0783 208 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 99 207 IPR029055 -
Apr10g0783 208 Pfam Proteasome subunit 30 102 IPR001353 GO:0005839|GO:0051603
Apr10g0783 208 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 1 98 IPR029055 -
Apr10g0783 208 ProSiteProfiles Proteasome alpha-type subunit profile. 20 195 IPR023332 -
Apr10g0783 208 PANTHER PROTEASOME SUBUNIT ALPHA/BETA 1 207 - -
Apr10g0783 208 SMART Proteasome_A_N_2 5 27 IPR000426 GO:0006511|GO:0019773
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0783 Apr-Chr10 19513605 19518533 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0783 K02728 - gmx:102662733 374.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2075 4 29628812 29631846 Apr10g0783 10 19513605 19518533 PCT