Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g01267 ATGTCTCGAAGATATGATAGTCGCACAACAATCTTCTCCCCGGAAGGACGTCTTTACCAAGTGGAATATGCAATGGAAGCTATCGGGAACGCTGGTACTGCAATAGGGATCTTATCAAAAGATGGAGTTGTGCTGGTTGGTGAAAAAAAGGTCACATCCAAGCTGCTCCAAACCTCAACCTCCACCGAGAAAATGTACAAGATTGATGATCATGTTGCATGTGCTGTGGCTGGAATAATGTCTGATGCCAACATTCTAATCAATACTGCAAGGGTCCAAGCACAACGGTACACTTATGCTTATCAAGAGCCAATGCCAGTGGAGCAGCTAGTTCAGTCTCTGTGTGATACCAAGCAAGGTTACACCCAATTTGGTGGTCTTCGGCCATTTGGGGTCTCATTTCTGTTTGCAGGATGGGACAAAAACTTTGGCTTTCAGCTTTACATGAGTGACCCTAGTGGAAATTATGGTGGCTGGAAAGCTGGAGCCATTGGGGCAAATAACCAGGCAGCACAATCAATACTGAAACAAGACTACAAGGATGATATCACAAGAGAAGAAGCAGTTCAACTTGCATTGAAGGTTTTAAGTAAAACCATGGACAGCACAAGTCTGACCTCAGAAAAGCTTGAACTTGCTGAGGTTTTTCTGTCACCCTCTGGTAAAGTGAAGTATGAAGTTTGCTCCCCAGAGTCCCTAACTAAGCTGTTGGTGAAGTTTGGTGTAACTCAACCTGCAACAGACACTGCCTAG 753 0.4462 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGTAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNFGFQLYMSDPSGNYGGWKAGAIGANNQAAQSILKQDYKDDITREEAVQLALKVLSKTMDSTSLTSEKLELAEVFLSPSGKVKYEVCSPESLTKLLVKFGVTQPATDTA* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g01267 250 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 1 249 IPR029055 -
Lapu10g01267 250 Pfam Proteasome subunit A N-terminal signature 5 27 IPR000426 GO:0006511|GO:0019773
Lapu10g01267 250 PANTHER PROTEASOME SUBUNIT ALPHA/BETA 9 220 - -
Lapu10g01267 250 ProSiteProfiles Proteasome alpha-type subunit profile. 20 237 IPR023332 -
Lapu10g01267 250 FunFam Proteasome subunit alpha type 1 249 - -
Lapu10g01267 250 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 4 227 IPR029055 -
Lapu10g01267 250 ProSitePatterns Proteasome alpha-type subunits signature. 5 27 IPR000426 GO:0006511|GO:0019773
Lapu10g01267 250 Pfam Proteasome subunit 30 214 IPR001353 GO:0005839|GO:0051603
Lapu10g01267 250 CDD proteasome_alpha_type_4 3 215 - -
Lapu10g01267 250 SMART Proteasome_A_N_2 5 27 IPR000426 GO:0006511|GO:0019773
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g01267 Lapu-Chr10 16809960 16813383 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g01267 K02728 - gmx:100802854 483.796
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g01785 1 30830363 30836843 Lapu10g01267 10 16809960 16813383 PCT