Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu10g0259 Acco07g1662 Accr6g01402 Adu09g00673 Aed2g1562 Aev09g0339 Ahy19g0882 Ahy9g0645 Aip09g00969 Alju05g0512 Amo19g0831 . Apr10g0012 Arst9g00899 Bach6g01270 Bisa06g0691 Bva02g01123 Car07g03238 Cca01g02457 . . Enph10g1003 Glsi07g1622 Gma03g00793 Gma16g00776 Gso16g0703 Gso3g0765 Lal14g0190 . . Lan12g0043 . . Lapu10g00990 Lasa4g00302 . . . . Lja3g4383 . Mepo1g04467 . Mibi04g1664 Mtr8g0306 . . Prci12g0555 Psa4g4723 Pste6g00919 Pumo7g02225 Rops4g00231 Seca4g10414 Spst4g01548 Ssu2g0611 Sto1g2510 . Trre15g00328 Tsu08g00283 Vian9g01298 Vifa4g01527 Vimu9g01423 Viun10g00598 Vivi7g03903 .
Pvu10g0260 Acco07g1660 Accr6g01400 . Aed2g1564 Aev09g0583 . . . Alju05g0515 . . Apr10g0013 . . . . . Cca01g02462 Dere11g0536 . Enph10g1005 Glsi07g1615 . Gma16g00773 Gso16g0700 . . . . . . . . . Lele37g1092 . Lele39g0322 . . . . . Mibi04g1663 . . Phco1g01724 . . Pste6g00936 Pumo7g02224 Rops4g00238 Seca4g10413 Spst4g01550 Ssu2g0614 Sto1g2513 . . . Vian9g01299 . Vimu9g01425 Viun10g00596 . .
Pvu10g0261 . . . . . . . . . . . . . . . . . . . . . . . . Gso16g0695 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Ssu2g0615 . . . . . . . . . .
Pvu10g0262 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0263 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phac10g00180 . . Psa4g4728 . . . . Spst4g01556 . . . . . . . . . . .
Pvu10g0264 . . Adu02g01890 . . . . Aip02g02186 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Vimu9g01118 . . .
Pvu10g0265 . . Adu02g01886 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Psa4g4733 . . . . Spst4g01562 . . . . . . . . . . Vra9g0929
Pvu10g0266 . . Adu02g01885 . Aev09g0441 . . . . . . . . . . . . . . . . . . . Gso16g0690 . . . . . . . . . . . . . . . . . . . . Phco1g01728 . . Pste6g00951 . . . . . . . . . . . . . . Vra9g0928
Pvu10g0267 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0268 . . Adu02g01883 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Vra9g0927
   
Previous Page 2429 of 2800 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Apr Apr10g0012 Chr10 160045 162869 -
Gso Gso16g0703 Chr16 10962709 10966345 +
Seca Seca4g10414 Chr4 239735301 239738078 +
Apr Apr10g0013 Chr10 236724 241994 +
Gso Gso16g0700 Chr16 10622095 10637597 -
Pvu Pvu10g0259 Chr10 3629864 3633299 -
Acco Acco07g1662 Chr07 32727155 32729741 +
Accr Accr6g01402 Chr6 44081645 44084219 +
Adu Adu09g00673 Chr09 9360777 9364508 +
Aed Aed2g1562 Chr2 19352745 19356764 -
Aev Aev09g0339 Chr09 2860349 2864215 -
Ahy Ahy19g0882 Chr19 13533813 13537023 +
Ahy Ahy9g0645 Chr9 9824492 9828036 +
Aip Aip09g00969 Chr09 13472033 13475701 +
Alju Alju05g0512 Chr05 8784352 8786905 -
Amo Amo19g0831 Chr19 13632671 13636133 +
Apr Apr10g0012 Chr10 160045 162869 -
Arst Arst9g00899 Chr9 9396082 9399820 +
Bach Bach6g01270 Chr6 12066910 12069329 -
Bisa Bisa06g0691 Chr06 20913781 20916993 -
Bva Bva02g01123 Chr02 15457327 15460324 +
Car Car07g03238 Chr07 59975440 59979161 -
Cca Cca01g02457 Chr01 53800852 53804320 -
Enph Enph10g1003 Chr10 12636480 12640225 -
Glsi Glsi07g1622 Chr07 52963506 52965959 +
Gma Gma03g00793 Chr03 28874000 28877738 -
Gma Gma16g00776 Chr16 11112404 11115976 +
Gso Gso16g0703 Chr16 10962709 10966345 +
Gso Gso3g0765 Chr3 27418903 27422678 -
Lal Lal14g0190 Chr14 2122638 2125302 +
Lan Lan12g0043 Chr12 380948 383808 -
Lapu Lapu10g00990 Chr10 11579389 11583390 +
Lasa Lasa4g00302 Chr4 10453031 10455719 +
Lja Lja3g4383 Chr3 85083025 85086142 +
Mepo Mepo1g04467 Chr1 52435501 52439145 -
Mibi Mibi04g1664 Chr04 44821722 44824264 +
Mtr Mtr8g0306 Chr8 3364256 3367942 +
Prci Prci12g0555 Chr12 4838755 4841978 -
Psa Psa4g4723 Chr4 416861269 416864492 -
Pste Pste6g00919 Chr6 3602037 3605823 -
Pumo Pumo7g02225 Chr7 63002565 63005513 +
Rops Rops4g00231 Chr4 7519294 7522306 -
Seca Seca4g10414 Chr4 239735301 239738078 +
Spst Spst4g01548 Chr4 54504807 54507510 -
Ssu Ssu2g0611 Chr2 35078737 35081454 +
Sto Sto1g2510 Chr1 32544824 32546973 -
Trre Trre15g00328 Chr15 2257033 2260262 +
Tsu Tsu08g00283 Chr08 2717510 2721375 +
Vian Vian9g01298 Chr9 27792652 27795347 -
Vifa Vifa4g01527 Chr4 449349978 449352802 -
Vimu Vimu9g01423 Chr9 22801450 22804269 -
Viun Viun10g00598 Chr10 5527831 5531260 +
Vivi Vivi7g03903 Chr7 105064922 105068096 -
Pvu Pvu10g0260 Chr10 3702389 3707644 +
Acco Acco07g1660 Chr07 32644598 32652398 +
Accr Accr6g01400 Chr6 43989872 43995805 +
Aed Aed2g1564 Chr2 19378860 19384341 +
Aev Aev09g0583 Chr09 5200215 5204004 +
Alju Alju05g0515 Chr05 8885267 8894231 -
Apr Apr10g0013 Chr10 236724 241994 +
Cca Cca01g02462 Chr01 53847698 53854868 +
Dere Dere11g0536 Chr11 9024078 9027948 +
Enph Enph10g1005 Chr10 12669943 12677090 -
Glsi Glsi07g1615 Chr07 52382135 52398060 -
Gma Gma16g00773 Chr16 10758728 10774327 -
Gso Gso16g0700 Chr16 10622095 10637597 -
Lele Lele37g1092 Chr37 20616468 20620964 +
Lele Lele39g0322 Chr39 2270310 2274588 +
Mibi Mibi04g1663 Chr04 44768611 44774244 +
Phco Phco1g01724 Chr1 55556152 55562369 +
Pste Pste6g00936 Chr6 3678108 3686678 +
Pumo Pumo7g02224 Chr7 62899381 62906727 -
Rops Rops4g00238 Chr4 7771471 7783501 -
Seca Seca4g10413 Chr4 239667799 239672473 -
Spst Spst4g01550 Chr4 54528595 54534390 +
Ssu Ssu2g0614 Chr2 35229494 35236893 +
Sto Sto1g2513 Chr1 32588101 32593047 +
Vian Vian9g01299 Chr9 27856426 27858327 +
Vimu Vimu9g01425 Chr9 22897045 22900650 +
Viun Viun10g00596 Chr10 5430451 5434466 -
Pvu Pvu10g0261 Chr10 3709306 3716148 -
Gso Gso16g0695 Chr16 10457316 10465838 -
Ssu Ssu2g0615 Chr2 35241073 35242287 -
Pvu Pvu10g0262 Chr10 3728084 3733013 -
Pvu Pvu10g0263 Chr10 3751033 3754735 +
Phac Phac10g00180 Chr10 3187844 3191895 +
Psa Psa4g4728 Chr4 417303808 417308737 +
Spst Spst4g01556 Chr4 54633665 54636141 +
Pvu Pvu10g0264 Chr10 3762416 3764929 +
Adu Adu02g01890 Chr02 79929972 79937795 -
Aip Aip02g02186 Chr02 92306051 92313958 +
Vimu Vimu9g01118 Chr9 18588344 18590291 +
Pvu Pvu10g0265 Chr10 3765682 3769652 -
Adu Adu02g01886 Chr02 79851515 79857131 -
Psa Psa4g4733 Chr4 417395015 417399832 +
Spst Spst4g01562 Chr4 54695433 54699483 -
Vra Vra9g0929 Chr9 11106043 11111622 +
Pvu Pvu10g0266 Chr10 3786002 3790114 -
Adu Adu02g01885 Chr02 79845299 79851011 +
Aev Aev09g0441 Chr09 3842595 3854057 +
Gso Gso16g0690 Chr16 10310818 10317036 -
Phco Phco1g01728 Chr1 55637860 55642738 -
Pste Pste6g00951 Chr6 3761476 3762208 -
Vra Vra9g0928 Chr9 11094026 11101159 +
Pvu Pvu10g0267 Chr10 3791239 3791493 -
Pvu Pvu10g0268 Chr10 3811658 3815819 -
Adu Adu02g01883 Chr02 79714823 79779654 +
Vra Vra9g0927 Chr9 11084700 11089326 +
Aev Aev09g0441 Chr09 3842595 3854057 +
Aev Aev09g0583 Chr09 5200215 5204004 +