Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4733 ATGCCTTCACCGTCCTCCTCCTCCTCCGCCGCCGCCGCTCCTCAATTCCTCTATGACGTCTTCCTCAACTTCAGAGGCGAAGACGCTCGTCGTAGCTTCGTTCCTCAACTCCACAAGTCCCTCTCAGACGCCAGAATCCACACTTTTCTTGACGACGAGAATCTTGAAAAGGGAACGGATCTGGAACCAGAATTATTGCGAGCAATTGAACTCTCTCGTATTTCCATTGTTGTTTTCTCCAAAGCTTATATCACATCTAGCTGGTGTCTTAGAGAGCTTGTTCACATCATGAACTGCCGCAAAACTAGTGGACAGGTGGTTGTTCCCGTATTTTACTACGTTGACCCGGCGGTTGTGCGTCATCAGAAGGATGGTTATAGAAAAGCTTTGCATTCAACTGCAAAAAGAAGACTTCCCGGAGGAGAAAGGATGGAACATGTGTTATCCAACTGGATGACTGTACTGACCGAAGCTGCAAATATATCTGGATGGCATACCAAAAATTTCAGCAATGAAGTTGAGTTGATTTCTGAAATAGTTAAAGATGTTTTGAGAAAGCTAAAGAGCAGATCATTGAAAATTACCGAATTTCCAGTTGGATTGGATACTCGTGTGCAGCAAGGAACAAAAACTGTGGAAGGATTGGTTTTGAATTCGCAAAGCACCGGCAATCTTTGCTTCAAAACTGATACTTTCAAGGAGATGAAGAATTTGAGACTTTTAAAACTTCACCACGTTGATCTTATTGGAGATTTTGGGCATCTTTCTCAAGAACTGAGATGGCTCCATTGGCAAGGATTTACTGGTGAATGTATACCTGATTTGGAAGACTCGCTAGTCTCAAATCTTTCCTTGAAATCACATTTGATTGGAATGGGAAATTGCCACACTGTCATAGATACTCTTTGCAAGCGCATACCACAGGAATTAACAACCAATGATTCAAGCAATTTTTTCCTTCCGGGTGGTATTTATCCTTCTTGGTTAGCCTATACAAGTGATGGATCTTCAGCACCATTTTATATTCCCAAGGATATTGATTGTCCAATGGAGGGAATAGTCTTACGTGTTGTTTATTCATCAAAATCTGAAACCATGGCAGTTGAATGTCTTACTAGTGTCTTGATCATTAATTACACAAAGTGCACCATCCATATATACAAACGAGACACAGTCGTGTCCTTTATTGATGAAGATTGGAAGAATGTAACATCAAATCTAGAACCTGGTGACGATGTCAAGATTCATGTGGTTTTTGGGCATGGATTGATTGTTAGGAAGACAACTGTTTGTCTAATATATGGCCAGTCAGTTATTATGGAAGTTGATTCATCCATTACGATGGAAATGAACGTGCAGCCGCAGCCGATACCTGAACTGGACATGCAAGCATCGTCTAGTGTGACAGTACCAAAGGCCAATAAAAGTTTATTTTCAGGATTTGGAAAAAGAATGGGTGCATGTTTATGCCTGAACCAGCATAGAGATAAAGATCTGAACAATTTTTGA 1509 0.4109 MPSPSSSSSAAAAPQFLYDVFLNFRGEDARRSFVPQLHKSLSDARIHTFLDDENLEKGTDLEPELLRAIELSRISIVVFSKAYITSSWCLRELVHIMNCRKTSGQVVVPVFYYVDPAVVRHQKDGYRKALHSTAKRRLPGGERMEHVLSNWMTVLTEAANISGWHTKNFSNEVELISEIVKDVLRKLKSRSLKITEFPVGLDTRVQQGTKTVEGLVLNSQSTGNLCFKTDTFKEMKNLRLLKLHHVDLIGDFGHLSQELRWLHWQGFTGECIPDLEDSLVSNLSLKSHLIGMGNCHTVIDTLCKRIPQELTTNDSSNFFLPGGIYPSWLAYTSDGSSAPFYIPKDIDCPMEGIVLRVVYSSKSETMAVECLTSVLIINYTKCTIHIYKRDTVVSFIDEDWKNVTSNLEPGDDVKIHVVFGHGLIVRKTTVCLIYGQSVIMEVDSSITMEMNVQPQPIPELDMQASSSVTVPKANKSLFSGFGKRMGACLCLNQHRDKDLNNF* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4733 502 Gene3D - 13 195 IPR035897 -
Psa4g4733 502 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 21 207 - -
Psa4g4733 502 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 210 274 - -
Psa4g4733 502 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 278 433 - -
Psa4g4733 502 ProSiteProfiles TIR domain profile. 16 187 IPR000157 GO:0007165
Psa4g4733 502 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 164 IPR035897 -
Psa4g4733 502 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 278 433 IPR044974 GO:0006952
Psa4g4733 502 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 207 IPR044974 GO:0006952
Psa4g4733 502 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 210 274 IPR044974 GO:0006952
Psa4g4733 502 Pfam TIR domain 18 191 IPR000157 GO:0007165
Psa4g4733 502 SMART till_3 17 161 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4733 Psa-Chr4 417395015 417399832 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4733 20 199 Miscellaneous Gene Families AT4G19920 32.778 9.27e-23 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4733 - - mtr:MTR_8g037235 254.218