Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu10g0269 . . Adu09g00672 Aed2g1569 Aev09g0341 Ahy19g0881 Ahy9g0643 Aip09g00968 . Amo19g0830 . Apr10g0014 Arst9g00898 Bach6g01271 . Bva02g01122 Car07g03239 . . . . . . Gma16g00753 Gso16g0688 . . . Lal19g0074 . . . Lapu10g00977 Lasa4g00309 . . . . Lja3g4377 . Mepo1g04468 Mesa29g05155 . Mtr8g0305 Phac10g00293 Phco1g01731 . Psa4g4741 . . . . Spst4g01130 . . . Trre15g00325 Tsu08g00282 . . . . Vivi7g03907 .
Pvu10g0270 . . Adu09g00671 Aed2g1573 Aev09g0342 Ahy19g0879 Ahy9g0642 Aip09g00965 . Amo19g0829 . Apr10g0329 Arst9g00896 . . . Car07g03240 Cca01g02466 . . . . . Gma16g00752 Gso16g0686 . Lal14g0188 . . Lan12g0044 . . Lapu10g00976 Lasa4g00310 . . . . Lja3g4376 . Mepo1g04470 Mesa29g05156 . Mtr8g0304 Phac10g00294 Phco1g01732 . Psa4g4742 . Pumo7g02213 Rops4g00241 Seca4g10411 Spst4g01564 Ssu2g0623 . . Trre15g00324 Tsu08g00281 Vian9g01306 . . Viun10g00550 Vivi7g03908 .
Pvu10g0271 . . . . . . . . . . . . . . . . . . . . . . . . Gso16g0685 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tsu08g00280 . . . . . Vra9g0924
Pvu10g0272 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phac10g00315 . . Psa4g4747 . . . . . . . . . Tsu08g00279 . . . . . Vra9g0917
Pvu10g0273 . . Adu02g01877 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tsu08g00275 . . . . . .
Pvu10g0274 . . . . . . Ahy2g1694 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Ssu2g0628 . . . Tsu08g00272 . . Vimu9g01430 . . .
Pvu10g0275 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Psa4g4751 . . . . Spst4g01566 . . . . . . . . . . Vra9g0914
Pvu10g0276 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0277 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0278 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Pste6g00956 . . . . . . . . . . . . . . Vra9g0912
   
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Select Species Gene Chromosome Start End Strand
Apr Apr10g0014 Chr10 287924 288790 +
Gso Gso16g0688 Chr16 10086155 10087494 -
Pvu Pvu10g0269 Chr10 3827903 3829434 +
Adu Adu09g00672 Chr09 9258345 9260060 -
Aed Aed2g1569 Chr2 19563243 19564148 +
Aev Aev09g0341 Chr09 2900804 2901733 +
Ahy Ahy19g0881 Chr19 13426374 13427789 -
Ahy Ahy9g0643 Chr9 9647842 9648756 -
Aip Aip09g00968 Chr09 13371810 13373537 -
Amo Amo19g0830 Chr19 13533279 13535091 -
Apr Apr10g0014 Chr10 287924 288790 +
Arst Arst9g00898 Chr9 9294292 9295621 -
Bach Bach6g01271 Chr6 12089938 12090852 +
Bva Bva02g01122 Chr02 15435491 15437298 -
Car Car07g03239 Chr07 60000908 60002477 +
Gma Gma16g00753 Chr16 10207126 10208650 -
Gso Gso16g0688 Chr16 10086155 10087494 -
Lal Lal19g0074 Chr19 575683 581629 +
Lapu Lapu10g00977 Chr10 11470939 11472186 -
Lasa Lasa4g00309 Chr4 10679757 10680665 +
Lja Lja3g4377 Chr3 85044376 85045678 -
Mepo Mepo1g04468 Chr1 52465915 52467254 +
Mesa Mesa29g05155 Chr29 84853871 84854791 +
Mtr Mtr8g0305 Chr8 3334542 3336052 -
Phac Phac10g00293 Chr10 4113759 4115418 +
Phco Phco1g01731 Chr1 55693525 55694424 +
Psa Psa4g4741 Chr4 417776284 417778208 +
Spst Spst4g01130 Chr4 44436647 44440196 -
Trre Trre15g00325 Chr15 2228086 2228994 -
Tsu Tsu08g00282 Chr08 2685007 2686436 -
Vivi Vivi7g03907 Chr7 105123312 105124566 -
Pvu Pvu10g0270 Chr10 3838549 3840001 +
Adu Adu09g00671 Chr09 9221944 9223827 -
Aed Aed2g1573 Chr2 19576608 19577705 +
Aev Aev09g0342 Chr09 2910840 2911961 +
Ahy Ahy19g0879 Chr19 13377226 13378885 -
Ahy Ahy9g0642 Chr9 9617409 9620655 -
Aip Aip09g00965 Chr09 13323838 13324956 -
Amo Amo19g0829 Chr19 13474129 13477151 -
Apr Apr10g0329 Chr10 7895514 7897405 -
Arst Arst9g00896 Chr9 9257365 9258992 -
Car Car07g03240 Chr07 60007031 60008731 +
Cca Cca01g02466 Chr01 53888973 53890065 -
Gma Gma16g00752 Chr16 10165531 10173746 -
Gso Gso16g0686 Chr16 10051987 10053613 -
Lal Lal14g0188 Chr14 2092421 2093539 -
Lan Lan12g0044 Chr12 392749 394347 +
Lapu Lapu10g00976 Chr10 11467763 11469329 -
Lasa Lasa4g00310 Chr4 10704997 10706109 +
Lja Lja3g4376 Chr3 85034545 85035924 -
Mepo Mepo1g04470 Chr1 52472708 52474069 +
Mesa Mesa29g05156 Chr29 84859118 84860098 +
Mtr Mtr8g0304 Chr8 3327971 3329964 -
Phac Phac10g00294 Chr10 4120288 4121896 +
Phco Phco1g01732 Chr1 55703847 55704965 +
Psa Psa4g4742 Chr4 417815476 417817772 +
Pumo Pumo7g02213 Chr7 62335642 62336838 +
Rops Rops4g00241 Chr4 7818051 7821045 +
Seca Seca4g10411 Chr4 239656359 239658417 -
Spst Spst4g01564 Chr4 54718099 54719223 +
Ssu Ssu2g0623 Chr2 35685668 35686255 -
Trre Trre15g00324 Chr15 2224546 2225661 -
Tsu Tsu08g00281 Chr08 2681033 2682265 -
Vian Vian9g01306 Chr9 27984424 27985542 +
Viun Viun10g00550 Chr10 5036780 5038461 -
Vivi Vivi7g03908 Chr7 105127966 105130506 +
Pvu Pvu10g0271 Chr10 3851464 3856068 +
Gso Gso16g0685 Chr16 9985816 9989947 -
Tsu Tsu08g00280 Chr08 2628787 2678216 -
Vra Vra9g0924 Chr9 11048884 11054075 +
Pvu Pvu10g0272 Chr10 3860208 3864654 +
Phac Phac10g00315 Chr10 4311873 4314043 -
Psa Psa4g4747 Chr4 417935053 417959916 +
Tsu Tsu08g00279 Chr08 2618755 2625494 -
Vra Vra9g0917 Chr9 10980077 10984870 +
Pvu Pvu10g0273 Chr10 3875269 3877859 +
Adu Adu02g01877 Chr02 79554309 79560910 +
Tsu Tsu08g00275 Chr08 2520371 2525415 -
Pvu Pvu10g0274 Chr10 3892972 3895290 +
Ahy Ahy2g1694 Chr2 87930234 87930915 +
Ssu Ssu2g0628 Chr2 35904411 35904941 +
Tsu Tsu08g00272 Chr08 2405823 2410566 -
Vimu Vimu9g01430 Chr9 22925998 22928487 -
Pvu Pvu10g0275 Chr10 3896814 3905599 +
Psa Psa4g4751 Chr4 418089641 418094979 +
Spst Spst4g01566 Chr4 54756174 54760089 -
Vra Vra9g0914 Chr9 10929804 10937882 -
Pvu Pvu10g0276 Chr10 3909177 3909987 -
Pvu Pvu10g0277 Chr10 3911568 3914942 -
Pvu Pvu10g0278 Chr10 3924009 3927700 -
Pste Pste6g00956 Chr6 3804604 3807048 -
Vra Vra9g0912 Chr9 10904594 10908183 -
Lal Lal19g0074 Chr19 575683 581629 +