Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4728 ATGTCACCACCATCTTCATCTTCCAACCCTCAATTGATGCACGACGTATTCCTCAACTTCAGAGGGGAAGATACTCGTACCAACTTCGTTTCTCATCTCGATGCGGCCCTCTCAAATGCAGGAATCAACACTTACATTGACCGACAGCTTCCTAAGGGAGCTGAATTGCGATCAGAACTATCAAGCGCAATACGAATGTCTCATATATCTATTGTTGTGTTCTCCAAAAGATATACAGAATCCAGTTGGTGTCTTTACGAACTCAAAGAGATAATGCTTTGCCACAGAACTGAGGAGGAAAGGATGGAATATGTGCTCGCTAGTTGGAGGAATGTGCTCACTCAAGCTGCTAATTTGTCTGGTTGGCATATCCCCAAATCCAGGAGTGAAAGTGAACTAGTGCAGCAGATTGTTGAGGATGTTTTGGAAAAACTAGGCAGCGCATTTTTGTCTATTACCGAATTTCCAGTTGGACTAGAATCCCATGGAACAGAAACTGTTGAGGGGTTGGTTTTGAAGTTGCAAGGAACCGACAGAGTTTGCTTCAGTGCTGATTCTTTCAAGGAGATGAAGAATCTGAGACTTCTACATCTTGATAGTGTTGACCTAGCTGGAGATTATGGCCGTACTGAGTTGGAAGCATCCCAAATTTCAAATATTTCCTTGAGATCGCTTTTGATTGGACTTGGAAGGTTCCACACAGCCATTGATACTCTTGGCAAGAGCATATCACAGGGATTGACAACCAATGATTCGACCGATTTCTCCCTTCCTGGTTGCAATTATCCCTCTTGGCTAGCCTATACAGGTGAAGGACATTCAGCGCAATTTCAAGTTCCTAAGGATATTGATTGTCACATGAAGGGAATAGTTTTATGTGTTGTTTATTCATCAACATCTGAAAACACGGGAGCTGAATGTCTTATTAGTATCTTGATCGTTAATTACACAAAATGCACCGTCCAGATACACAAGCGTGACACAGTAATGTCCTTTAACGATGAAGATTGGAAGAATGTAACATCAAATCTAGGACCTGGTGACGATGTGGAGATCTTTGTAGCTTTTGGCCGGGGATTAATTGTTAAGGAGACAGCTGTCTATATAATATATGGCCTGTCAATAACTACAGAATATGAGCAGTCAATTATTGCGGAAGTTGATTCATCAACTAACGTGGAAATAGAAACATCAGAGGAAGAGAACTTGCCTCCATCACTTAAAGTGAACATGCAATCACCGCCTAATGTGAAAGTGGAGGTATCAGCTGATGTTAAATCGAATCCGTCACCCGAATTGAAGGTTAAGTCGTCATCATCTACCATGAAAATAAAGCCATCACTAAAGTCCAATAAAAGTAGTATATTTGCAAGACTTGCAAAAAGAATGGGGGTATTTTTATGCGTGAACCAGCATAGAGATAAAGGTTTGAACAATTTGTTGTAG 1446 0.4108 MSPPSSSSNPQLMHDVFLNFRGEDTRTNFVSHLDAALSNAGINTYIDRQLPKGAELRSELSSAIRMSHISIVVFSKRYTESSWCLYELKEIMLCHRTEEERMEYVLASWRNVLTQAANLSGWHIPKSRSESELVQQIVEDVLEKLGSAFLSITEFPVGLESHGTETVEGLVLKLQGTDRVCFSADSFKEMKNLRLLHLDSVDLAGDYGRTELEASQISNISLRSLLIGLGRFHTAIDTLGKSISQGLTTNDSTDFSLPGCNYPSWLAYTGEGHSAQFQVPKDIDCHMKGIVLCVVYSSTSENTGAECLISILIVNYTKCTVQIHKRDTVMSFNDEDWKNVTSNLGPGDDVEIFVAFGRGLIVKETAVYIIYGLSITTEYEQSIIAEVDSSTNVEIETSEEENLPPSLKVNMQSPPNVKVEVSADVKSNPSPELKVKSSSSTMKIKPSLKSNKSSIFARLAKRMGVFLCVNQHRDKGLNNLL* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4728 481 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 213 371 - -
Psa4g4728 481 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 17 96 - -
Psa4g4728 481 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 164 209 - -
Psa4g4728 481 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 96 IPR044974 GO:0006952
Psa4g4728 481 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 164 209 IPR044974 GO:0006952
Psa4g4728 481 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 213 371 IPR044974 GO:0006952
Psa4g4728 481 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 122 IPR035897 -
Psa4g4728 481 ProSiteProfiles TIR domain profile. 12 145 IPR000157 GO:0007165
Psa4g4728 481 Pfam TIR domain 14 98 IPR000157 GO:0007165
Psa4g4728 481 Gene3D - 103 152 IPR035897 -
Psa4g4728 481 Gene3D - 8 102 IPR035897 -
Psa4g4728 481 SMART till_3 13 119 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4728 Psa-Chr4 417303808 417308737 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4728 12 121 Miscellaneous Gene Families AT5G44920 41.228 7.15e-18 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4728 - - mtr:MTR_3g072140 310.457