Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi4g1174 Acco12g2110 . Accr10g00016 . . . . . Aev05g0479 . Ahy15g0827 . Aip05g00844 . Alju12g0042 . . . Apr3g0297 Apr7g1049 . . Bach10g00563 . Bisa01g1833 . Bva08g00771 . . . . . Dere13g0666 . Dod02g0534 . Enph14g0569 . Glsi09g0584 . . Gma01g01752 Gma02g00492 Gma16g01257 . . . . . Lal15g1493 . . . . . . . . . . Lapu3g01666 . Lasa4g02323 . Lele53g0037 Lele54g0034 Lele55g1459 Lele56g1394 . . . . . Lja4g3205 . Mal5g3420 Mepo1g02069 . Mesa29g02238 . . . . Mtr8g2478 Phac3g04020 . Phco8g00463 . Prci5g0071 . . . . . Pte14g00900 . . . Pumo4g02134 . Pvu3g2632 . . . . . Spst3g03869 . . . . Sto11g1532 . Tpr4g4195 Trre15g04095 . . Tsu04g03427 . . . . Vimu7g02990 . . . Vivi1g03047 . . .
Vvi4g1175 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva08g00772 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal5g3417 . . . . . . . Mtr8g2475 . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto11g1531 . Tpr4g4200 . . . Tsu04g03431 . . . . . . . . . . . .
Vvi4g1176 . . . . . . . . Aev05g0478 . . . Aip05g00845 . . . . . Apr3g0298 Apr7g1050 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja2g0491 . Mal6g1101 . . . . . . . Mtr5g0817 . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto6g3862 Sto11g1530 Tpr2g1028 . . . Tsu05g00771 . . . . . . . . . . . . .
Vvi4g1177 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g1178 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g1179 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva08g00773 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto11g1529 . . . . . . . . . . . . . . . . . .
Vvi4g1180 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g1181 . . . . . . . . Aev05g0477 . Ahy15g0828 . Aip05g00847 . . . . . Apr3g0299 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g1182 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva08g00774 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lasa4g02320 . . . . . . . . . . . . . Mepo1g02071 . . . . . . . Phac3g04021 . . . . . . . . . . . . . Pumo4g02135 . Pvu3g2633 . Rops2g03342 . . . . . . . . Sto11g1528 . . Trre15g04096 . . . . . Vifa4g02426 . . . . . Vivi1g03048 . . .
Vvi4g1183 . . . . . . . . Aev05g0476 . Ahy15g0833 . Aip05g00848 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi4g1174 Chr4 18633898 18634656 +
Acco Acco12g2110 Chr12 32591161 32591838 +
Accr Accr10g00016 Chr10 252988 253656 -
Aev Aev05g0479 Chr05 3351028 3351618 -
Ahy Ahy15g0827 Chr15 11771274 11772161 +
Aip Aip05g00844 Chr05 11326239 11327380 +
Alju Alju12g0042 Chr12 687237 687953 -
Apr Apr3g0297 Chr3 5777484 5778342 +
Apr Apr7g1049 Chr7 17468064 17468645 +
Bach Bach10g00563 Chr10 4020583 4021365 +
Bisa Bisa01g1833 Chr01 31865754 31866524 -
Bva Bva08g00771 Chr08 3966900 3967964 +
Dere Dere13g0666 Chr13 8240877 8241647 +
Dod Dod02g0534 Chr02 7022563 7022940 -
Enph Enph14g0569 Chr14 7554373 7555119 +
Glsi Glsi09g0584 Chr09 4049671 4050459 +
Gma Gma01g01752 Chr01 53198523 53199402 -
Gma Gma02g00492 Chr02 4963963 4965618 -
Gma Gma16g01257 Chr16 30760168 30761239 -
Lal Lal15g1493 Chr15 17087219 17087926 -
Lapu Lapu3g01666 Chr3 24550624 24551864 +
Lasa Lasa4g02323 Chr4 458976316 458977020 -
Lele Lele53g0037 Chr53 311241 311972 +
Lele Lele54g0034 Chr54 339928 340683 -
Lele Lele55g1459 Chr55 20755362 20756081 -
Lele Lele56g1394 Chr56 17011916 17012671 +
Lja Lja4g3205 Chr4 60599520 60600358 -
Mal Mal5g3420 Chr5 98986865 98987587 -
Mepo Mepo1g02069 Chr1 21292196 21293259 +
Mesa Mesa29g02238 Chr29 30696082 30696807 +
Mtr Mtr8g2478 Chr8 35202779 35203904 -
Phac Phac3g04020 Chr3 39722677 39723348 +
Phco Phco8g00463 Chr8 4384194 4384865 -
Prci Prci5g0071 Chr5 1508307 1509400 -
Pte Pte14g00900 Chr14 30741532 30742772 -
Pumo Pumo4g02134 Chr4 30461321 30462368 +
Pvu Pvu3g2632 Chr3 48347246 48347922 +
Spst Spst3g03869 Chr3 88758963 88759631 -
Sto Sto11g1532 Chr11 14511138 14511938 -
Tpr Tpr4g4195 Chr4 48974972 48976041 +
Trre Trre15g04095 Chr15 51483096 51483812 +
Tsu Tsu04g03427 Chr04 43490291 43491041 +
Vimu Vimu7g02990 Chr7 25190639 25191562 +
Vivi Vivi1g03047 Chr1 67000212 67001300 +
Vvi Vvi4g1175 Chr4 18646513 18648928 -
Bva Bva08g00772 Chr08 3973742 3975409 -
Mal Mal5g3417 Chr5 98902008 98912096 -
Mtr Mtr8g2475 Chr8 35178566 35180665 -
Sto Sto11g1531 Chr11 14500264 14501825 +
Tpr Tpr4g4200 Chr4 49092940 49095100 -
Tsu Tsu04g03431 Chr04 43525813 43528093 +
Vvi Vvi4g1176 Chr4 18654888 18661271 -
Aev Aev05g0478 Chr05 3344375 3346518 -
Aip Aip05g00845 Chr05 11330861 11333758 +
Apr Apr3g0298 Chr3 5801570 5804827 +
Apr Apr7g1050 Chr7 17476547 17480721 +
Lja Lja2g0491 Chr2 4451746 4454874 +
Mal Mal6g1101 Chr6 16750766 16754497 -
Mtr Mtr5g0817 Chr5 8048724 8051651 +
Sto Sto6g3862 Chr6 43028041 43029201 +
Sto Sto11g1530 Chr11 14486016 14488538 -
Tpr Tpr2g1028 Chr2 12136895 12141539 +
Tsu Tsu05g00771 Chr05 6502255 6510187 +
Vvi Vvi4g1177 Chr4 18662164 18666552 -
Vvi Vvi4g1178 Chr4 18671923 18672803 +
Vvi Vvi4g1179 Chr4 18678666 18680051 -
Bva Bva08g00773 Chr08 3980761 3982428 -
Sto Sto11g1529 Chr11 14477471 14478884 -
Vvi Vvi4g1180 Chr4 18682663 18683058 +
Vvi Vvi4g1181 Chr4 18694277 18695703 +
Aev Aev05g0477 Chr05 3335680 3338786 -
Ahy Ahy15g0828 Chr15 11776581 11779555 +
Aip Aip05g00847 Chr05 11489538 11499546 +
Apr Apr3g0299 Chr3 5810130 5812048 -
Vvi Vvi4g1182 Chr4 18715839 18719071 +
Bva Bva08g00774 Chr08 3987125 3993145 -
Lasa Lasa4g02320 Chr4 458651923 458653297 -
Mepo Mepo1g02071 Chr1 21326471 21329176 +
Phac Phac3g04021 Chr3 39741939 39744392 +
Pumo Pumo4g02135 Chr4 30567058 30595230 +
Pvu Pvu3g2633 Chr3 48370807 48371874 +
Rops Rops2g03342 Chr2 61441161 61443318 -
Sto Sto11g1528 Chr11 14462678 14467793 -
Trre Trre15g04096 Chr15 51495464 51499651 +
Vifa Vifa4g02426 Chr4 731335779 731337322 -
Vivi Vivi1g03048 Chr1 67119527 67122009 +
Vvi Vvi4g1183 Chr4 18723210 18724761 -
Aev Aev05g0476 Chr05 3324584 3327709 -
Ahy Ahy15g0833 Chr15 11931784 11935332 +
Aip Aip05g00848 Chr05 11506605 11508161 +