Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi19g0600 . . . . Adu04g00387 . . Aed4g2480 . . . Ahy11g0708 . Aip01g00699 . . . . Apr2g0187 . Arst4g00626 . Bach7g01243 . . . Bva12g02737 . . Car05g00989 . Cca09g01097 . . . Dod05g0902 . . . . Gma08g02974 . . . Gso8g2630 . . . . . . . Lal5g0796 . . . . . . . Lapu6g01590 . Lasa1g00987 . . . . . . . . . Lja6g1391 Lja6g2414 . . Mepo6g00913 . . . . . . . . . Phco11g00805 . . . Psa5g4121 . . . Pte9g01111 Pte2g00428 . . Pumo2g00364 . Pvu6g1558 . Rops11g01040 . Seca6g04461 . Spst6g01178 . . Ssu9g0944 . Sto10g0456 . . Trre3g00985 . . . Vian6g01428 . Vifa1g09953 . Vimu2g01096 . Viun6g02302 . Vivi4g03301 . . .
Vvi19g0601 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0602 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0603 Acco10g0940 . Accr4g01806 . Adu01g00153 Adu07g00283 Aed3g2506 Aed4g2479 Aev07g0242 . Ahy17g0395 Ahy11g0707 Aip07g00305 Aip01g00695 Alju08g1829 . . Amo11g0535 Apr2g0188 Apr9g1745 Arst1g00230 Arst7g00443 . . Bisa09g0034 . . . . Car05g00991 Cca05g01937 Cca09g01099 Dere04g2142 . Dod08g0287 . Enph1g0652 . Glsi08g0067 . Gma08g02975 Gma18g00827 Gma02g02740 Gma14g00200 Gso8g2631 Gso8g2631 Gso8g2631 Gso8g2631 . . Lal6g0074 Lal3g0892 . . . . . . . . Lapu6g02594 Lapu6g02594 Lasa5g01028 . Lele01g1422 Lele02g1710 Lele03g1424 Lele04g1693 . . . . Lja6g1390 Lja6g2416 . . Mepo3g04600 . Mesa9g01727 . Mibi05g1712 . . . . . Phco11g02002 Phco3g00257 Prci8g1141 . . . Pste7g01294 Pste8g00450 . Pte8g00059 . Pte8g00059 Pumo1g00887 Pumo9g01890 Pvu6g0467 Pvu8g2768 Rops11g02770 Rops9g00339 Seca6g03048 Seca6g03048 . Spst8g00873 Ssu6g3473 Ssu9g0946 Sto9g1890 . . . Trre5g01358 . . . Vian6g00380 Vian7g01202 Vifa2g00934 . Vimu2g02524 Vimu1g00442 Viun6g00794 Viun8g02816 Vivi3g05642 . Vra6g0241 Vra6g0241
Vvi19g0604 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0605 . . . . . . Aed3g2507 . Aev07g0241 . Ahy17g0394 . Aip07g00304 . . . . . . Apr9g1746 . . . . . . . . Car02g02043 . Cca05g01938 . . . Dod08g0283 . . . . . . . . Gma14g00199 . . . . . . . . . . . . . . . . . . . Lasa2g02236 . . . . . . . . . . . . . Mepo7g02783 . Mesa17g04363 . . . Mtr8g0355 . Phac8g03596 . . . . . . . . . . . . . Pumo9g01889 . Pvu8g2770 . Rops9g00338 . Seca8g00325 . Spst8g00875 Ssu6g3474 . . . . . . Trre9g04974 . Tsu08g00345 . Vian7g01201 . Vifa1g03285 . . . Viun8g02819 . Vivi7g02742 Vra6g0240 .
Vvi19g0606 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0607 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0608 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0609 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Lja Lja6g2416 Chr6 53015718 53016182 +
Adu Adu04g00387 Chr04 4612692 4613819 +
Arst Arst4g00626 Chr4 4586553 4588153 +
Bach Bach7g01243 Chr7 22792893 22794020 -
Lapu Lapu6g01590 Chr6 15791983 15795036 +
Lasa Lasa1g00987 Chr1 80132934 80134055 +
Lja Lja6g2414 Chr6 52993374 52995260 +
Mepo Mepo6g00913 Chr6 9381972 9383640 +
Phco Phco11g00805 Chr11 5892181 5893308 +
Pte Pte9g01111 Chr9 32927151 32929134 +
Pte Pte2g00428 Chr2 3341142 3343324 +
Pumo Pumo2g00364 Chr2 6210144 6211893 -
Pvu Pvu6g1558 Chr6 26305099 26307521 -
Rops Rops11g01040 Chr11 15203104 15204596 +
Seca Seca6g04461 Chr6 112142085 112143212 -
Spst Spst6g01178 Chr6 10831256 10832383 +
Trre Trre3g00985 Chr3 7038627 7039751 +
Vian Vian6g01428 Chr6 31830243 31831370 -
Vifa Vifa1g09953 Chr1 1629926218 1629927342 -
Vimu Vimu2g01096 Chr2 7239957 7241084 +
Viun Viun6g02302 Chr6 28437043 28439381 -
Vivi Vivi4g03301 Chr4 147986136 147987593 -
Vvi Vvi19g0600 Chr19 6626104 6627030 +
Adu Adu04g00387 Chr04 4612692 4613819 +
Aed Aed4g2480 Chr4 26881742 26882770 -
Ahy Ahy11g0708 Chr11 12065972 12067382 -
Aip Aip01g00699 Chr01 11385085 11386437 -
Apr Apr2g0187 Chr2 2503766 2505268 +
Arst Arst4g00626 Chr4 4586553 4588153 +
Bach Bach7g01243 Chr7 22792893 22794020 -
Bva Bva12g02737 Chr12 19956152 19958449 +
Car Car05g00989 Chr05 50660445 50662072 +
Cca Cca09g01097 Chr09 31992244 31994260 +
Dod Dod05g0902 Chr05 16526274 16527868 +
Gma Gma08g02974 Chr08 46240612 46242339 +
Gso Gso8g2630 Chr8 43940163 43942332 +
Lal Lal5g0796 Chr5 7365615 7386104 -
Lapu Lapu6g01590 Chr6 15791983 15795036 +
Lasa Lasa1g00987 Chr1 80132934 80134055 +
Lja Lja6g1391 Chr6 39270012 39272272 -
Lja Lja6g2414 Chr6 52993374 52995260 +
Mepo Mepo6g00913 Chr6 9381972 9383640 +
Phco Phco11g00805 Chr11 5892181 5893308 +
Psa Psa5g4121 Chr5 326524847 326526524 -
Pte Pte9g01111 Chr9 32927151 32929134 +
Pte Pte2g00428 Chr2 3341142 3343324 +
Pumo Pumo2g00364 Chr2 6210144 6211893 -
Pvu Pvu6g1558 Chr6 26305099 26307521 -
Rops Rops11g01040 Chr11 15203104 15204596 +
Seca Seca6g04461 Chr6 112142085 112143212 -
Spst Spst6g01178 Chr6 10831256 10832383 +
Ssu Ssu9g0944 Chr9 39248167 39249186 +
Sto Sto10g0456 Chr10 3708512 3709642 +
Trre Trre3g00985 Chr3 7038627 7039751 +
Vian Vian6g01428 Chr6 31830243 31831370 -
Vifa Vifa1g09953 Chr1 1629926218 1629927342 -
Vimu Vimu2g01096 Chr2 7239957 7241084 +
Viun Viun6g02302 Chr6 28437043 28439381 -
Vivi Vivi4g03301 Chr4 147986136 147987593 -
Vvi Vvi19g0601 Chr19 6629704 6632584 +
Vvi Vvi19g0602 Chr19 6634525 6634899 +
Vvi Vvi19g0603 Chr19 6641728 6642291 +
Acco Acco10g0940 Chr10 23213509 23214198 +
Accr Accr4g01806 Chr4 19468429 19469103 -
Adu Adu01g00153 Chr01 2129248 2130340 +
Adu Adu07g00283 Chr07 2584055 2584793 -
Aed Aed3g2506 Chr3 27495686 27496247 +
Aed Aed4g2479 Chr4 26875111 26875746 -
Aev Aev07g0242 Chr07 1357015 1358971 -
Ahy Ahy17g0395 Chr17 3795392 3796887 -
Ahy Ahy11g0707 Chr11 12012846 12014059 -
Aip Aip07g00305 Chr07 2782507 2783865 -
Aip Aip01g00695 Chr01 11335340 11336691 -
Alju Alju08g1829 Chr08 15681917 15683665 -
Amo Amo11g0535 Chr11 9361864 9363024 -
Apr Apr2g0188 Chr2 2509824 2511295 +
Apr Apr9g1745 Chr9 26546820 26548624 +
Arst Arst1g00230 Chr1 2129233 2130424 +
Arst Arst7g00443 Chr7 2734257 2735845 -
Bisa Bisa09g0034 Chr09 411093 411509 +
Car Car05g00991 Chr05 50697138 50698783 +
Cca Cca05g01937 Chr05 39168949 39171054 +
Cca Cca09g01099 Chr09 32000731 32001312 +
Dere Dere04g2142 Chr04 24538597 24539268 -
Dod Dod08g0287 Chr08 3043488 3045142 -
Enph Enph1g0652 Chr1 32567646 32568372 +
Glsi Glsi08g0067 Chr08 623181 623771 +
Gma Gma08g02975 Chr08 46247623 46249139 +
Gma Gma18g00827 Chr18 9594394 9595873 -
Gma Gma02g02740 Chr02 53081194 53082698 +
Gma Gma14g00200 Chr14 1682785 1683964 -
Gso Gso8g2631 Chr8 43947588 43949196 +
Gso Gso8g2631 Chr8 43947588 43949196 +
Gso Gso8g2631 Chr8 43947588 43949196 +
Gso Gso8g2631 Chr8 43947588 43949196 +
Lal Lal6g0074 Chr6 438047 438643 -
Lal Lal3g0892 Chr3 8803658 8804856 -
Lapu Lapu6g02594 Chr6 26032312 26034404 -
Lapu Lapu6g02594 Chr6 26032312 26034404 -
Lasa Lasa5g01028 Chr5 286916193 286916816 +
Lele Lele01g1422 Chr01 8749344 8752497 -
Lele Lele02g1710 Chr02 20644630 20645304 -
Lele Lele03g1424 Chr03 8641600 8642283 -
Lele Lele04g1693 Chr04 21562633 21563301 -
Lja Lja6g1390 Chr6 39265709 39267583 -
Lja Lja6g2416 Chr6 53015718 53016182 +
Mepo Mepo3g04600 Chr3 57034347 57035955 +
Mesa Mesa9g01727 Chr9 39022132 39022725 -
Mibi Mibi05g1712 Chr05 20629842 20630525 -
Phco Phco11g02002 Chr11 16357783 16358412 -
Phco Phco3g00257 Chr3 1852464 1853081 -
Prci Prci8g1141 Chr8 7626710 7628017 -
Pste Pste7g01294 Chr7 11727372 11727989 +
Pste Pste8g00450 Chr8 2380528 2381043 -
Pte Pte8g00059 Chr8 1306933 1308754 -
Pte Pte8g00059 Chr8 1306933 1308754 -
Pumo Pumo1g00887 Chr1 13474917 13476817 -
Pumo Pumo9g01890 Chr9 48056970 48058573 -
Pvu Pvu6g0467 Chr6 15807003 15808569 +
Pvu Pvu8g2768 Chr8 57869115 57870549 +
Rops Rops11g02770 Chr11 47775602 47777098 -
Rops Rops9g00339 Chr9 4182763 4185480 -
Seca Seca6g03048 Chr6 96555994 96556593 -
Seca Seca6g03048 Chr6 96555994 96556593 -
Spst Spst8g00873 Chr8 7756800 7757399 +
Ssu Ssu6g3473 Chr6 77563880 77564491 +
Ssu Ssu9g0946 Chr9 39255127 39255741 +
Sto Sto9g1890 Chr9 23207663 23208340 +
Trre Trre5g01358 Chr5 9502320 9503584 -
Vian Vian6g00380 Chr6 16614099 16614728 +
Vian Vian7g01202 Chr7 20281399 20281992 -
Vifa Vifa2g00934 Chr2 249385039 249385704 +
Vimu Vimu2g02524 Chr2 21218370 21220738 -
Vimu Vimu1g00442 Chr1 2688401 2688994 -
Viun Viun6g00794 Chr6 17703966 17705743 +
Viun Viun8g02816 Chr8 36440668 36442170 +
Vivi Vivi3g05642 Chr3 123811693 123813014 -
Vra Vra6g0241 Chr6 1801393 1802837 -
Vra Vra6g0241 Chr6 1801393 1802837 -
Vvi Vvi19g0604 Chr19 6652782 6653499 -
Vvi Vvi19g0605 Chr19 6656884 6657780 -
Aed Aed3g2507 Chr3 27501490 27502308 -
Aev Aev07g0241 Chr07 1351902 1352702 +
Ahy Ahy17g0394 Chr17 3781828 3783003 +
Aip Aip07g00304 Chr07 2770191 2771346 +
Apr Apr9g1746 Chr9 26553418 26554763 -
Car Car02g02043 Chr02 50901053 50902496 -
Cca Cca05g01938 Chr05 39182470 39184173 -
Dod Dod08g0283 Chr08 3013870 3015160 +
Gma Gma14g00199 Chr14 1673788 1674990 +
Lasa Lasa2g02236 Chr2 496925432 496926313 -
Mepo Mepo7g02783 Chr7 38846447 38847378 -
Mesa Mesa17g04363 Chr17 74107063 74107968 -
Mtr Mtr8g0355 Chr8 4036543 4040893 -
Phac Phac8g03596 Chr8 42972995 42974437 -
Pumo Pumo9g01889 Chr9 48046785 48047687 +
Pvu Pvu8g2770 Chr8 57877822 57878646 -
Rops Rops9g00338 Chr9 4166035 4167265 +
Seca Seca8g00325 Chr8 3800123 3801022 +
Spst Spst8g00875 Chr8 7762356 7763174 -
Ssu Ssu6g3474 Chr6 77589115 77590008 -
Trre Trre9g04974 Chr9 55726125 55727054 -
Tsu Tsu08g00345 Chr08 3338581 3342267 -
Vian Vian7g01201 Chr7 20273684 20274502 +
Vifa Vifa1g03285 Chr1 511820068 511820961 -
Viun Viun8g02819 Chr8 36447011 36448213 -
Vivi Vivi7g02742 Chr7 91442172 91443164 +
Vra Vra6g0240 Chr6 1796159 1797222 +
Vvi Vvi19g0606 Chr19 6659430 6661175 -
Vvi Vvi19g0607 Chr19 6666899 6668227 -
Vvi Vvi19g0608 Chr19 6671725 6678055 +
Vvi Vvi19g0609 Chr19 6679174 6680448 +