Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0609 ATGAGTAATCTTGCTGAAACTGCACCCATCTCCAGTGCCCACATCCCAACCCTAAAACTCATAGATTGTTCTCTCAGACTCTGTGTGATCCCTCTCAGTGTTGCTACCATATGGCTTACTGTAACCAACCAACAGGATAATAGCATCTATGGGAAGCTAGAGTTCAGCAATCTCACCGGGCTCAAGTACATGGTTTGTATCAGTGGGATTTCTGCTGGTTATGCTCTTGTTGCTGTTGTTGCTTCATGGGTCAGATGCTTAGTTAATAAAGCATGGCTCTTCTTTGTCTCGGACCAGATTATGGCTTACTTAATGGTCACATCAGGGGCTGCAGTGTTGGAGATACTGTATTTAGCTTACAAAGGTGACAGGGGTGTGTCATGGAGTGAGGCCTGCAGTTCATATGGGAGGTTTTGCAGTAGGGTCAATTTGGCTCTGGCTCTTCATGCATTGGCTCTGTGCTGCTTCCTTGTTTTAGCTGTGATCTCAGCCTATAGGGTTTTCAGCATGTTTGAGCCTCCTGTTTCCTCCAAAGAGGTGGAGGAAGAAAGGGCTTCATGA 561 0.4617 MSNLAETAPISSAHIPTLKLIDCSLRLCVIPLSVATIWLTVTNQQDNSIYGKLEFSNLTGLKYMVCISGISAGYALVAVVASWVRCLVNKAWLFFVSDQIMAYLMVTSGAAVLEILYLAYKGDRGVSWSEACSSYGRFCSRVNLALALHALALCCFLVLAVISAYRVFSMFEPPVSSKEVEEERAS* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0609 186 PANTHER CASP-LIKE PROTEIN 4A4 16 168 - -
Vvi19g0609 186 Pfam Casparian strip membrane protein domain 18 155 IPR006702 -
Vvi19g0609 186 NCBIfam plant integral membrane protein TIGR01569 24 166 IPR006459 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0609 Vvi-Chr19 6679174 6680448 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0609 25 142 Miscellaneous Gene Families AT3G16300 29.104 1.09e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0609 - - vvi:100241778 344.739