Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3474 ATGGTTGGACCCGTCCTTCTCAACGCCAGCTTCAAGGTTCGTTTCTCATGCATAACAAGCCAAGCCCGTTCCCCCTTACCCGTCAGGCCCAAGCCGCTCAGAATGCCCAGTCCCCACCCCTACTGGGCTTCCTTGCAGGCCGACATTGAAGCCCACCTCAAACAAGCCATTCCCATGAAAGAACCCCTCGAGGTTTTCGAGCCCATGCACAGCCTCACTTTCGCCGCCCCCCGGACCACCGTGCCGGCCCTATGCCTCGCCGCCTGCGAGCTCGTCGGCGGCCACCGCCACCAAGCCATGGCCGCGGCTTCGGCCTTGTTACTCAACATAGCTAGCGCACATGCACACGAGCACCTTCCTCTGACCGACAGGCCCAAGCCCAAGGCAGGGCCCGGGCCCGCTCATGTGTATGGTCCCGACATTGAACTTCTCACCGGAGACGGGATTGTTCCGTTTGGGTTCGAGTTGTTGGCAAGATCCGATGACCCGACCCGAGGAAACTCTGAGCGGATCCTGCGTGTGACGATTGAGATATCACGTGCGATGGGATCGGAAGGGCTGCAAGGCGCGCAGCACATGGAAAAAACGTTGGAGGCCCAATCGGAGGGCGAGGAGTTGCGCCACGTGGAACGCATCAAGCGCGCTGTTGTGGAGAAAAAGGAAAGTGGGTTGCATGCATGTGGGGCCGCGTGTGGGGCGGTGTTGGGAGGGGGGAGTGAAGAGGAAATCGGAAGGTTGAGAAAGTTTGGGTTTTATGCGGGGATGGTGCGGGGAATGCTACGAAGGGGATTTGAGGAAGAAGAAGTCGAAGAGGTGAGAAATCTGGCACTCAAGGAATTGCGATTTTTTAAGGACAGAGATGTTGATGCAATTTCTAGTGTTGTTAATTTCTAG 894 0.5738 MVGPVLLNASFKVRFSCITSQARSPLPVRPKPLRMPSPHPYWASLQADIEAHLKQAIPMKEPLEVFEPMHSLTFAAPRTTVPALCLAACELVGGHRHQAMAAASALLLNIASAHAHEHLPLTDRPKPKAGPGPAHVYGPDIELLTGDGIVPFGFELLARSDDPTRGNSERILRVTIEISRAMGSEGLQGAQHMEKTLEAQSEGEELRHVERIKRAVVEKKESGLHACGAACGAVLGGGSEEEIGRLRKFGFYAGMVRGMLRRGFEEEEVEEVRNLALKELRFFKDRDVDAISSVVNF 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3474 297 PANTHER FARNESYL DIPHOSPHATE SYNTHASE 7 296 - -
Ssu6g3474 297 Gene3D Farnesyl Diphosphate Synthase 35 297 IPR008949 -
Ssu6g3474 297 PANTHER HETERODIMERIC GERANYLGERANYL PYROPHOSPHATE SYNTHASE SMALL SUBUNIT, CHLOROPLASTIC-LIKE 7 296 - -
Ssu6g3474 297 SUPERFAMILY Terpenoid synthases 40 255 IPR008949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3474 Ssu-Chr6 77589115 77590008 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3474 K13789 - gmx:100170743 362.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3474 6 77589115 77590008 Ssu6g3474 6 77589115 77590008 ECH