Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01937 ATGGGAGATAAATATAGTCTAGGAAGACAGCACAGTGGGATATGGAAATCCTTGAGAGATGGAGATTTTGATGAAGAAGAGGTTTGGGATGTTCTCAAGAACAGAAGTGATTATTCTTCTTCTGGGGTTCGAAAGTTCAAAGAAAAGGATCAATCCTCTTCTCTTCATGTTCCTGCTAGGCCTAGTGCAGCCAGAATGATCCCGAGAGCCACCAGCAGTAGCAACAGCAGTGCTAGTTCCTCTAATGAAGCCAAGGTTCTTCAGCAATCAGCACCTGTCAACGTTCCTGATTGGTCTAAGATTTATATGATTAACCCCCCCAAGAATAGTGCTTCAAGGTTtgatgattatgatggtgaagatgatggtgatgctgctgccaactatggtggggatagtgacgagggtggtggagatgagaatgatgagtatgatTCAAAGCTTCCTCCACATGAGTTTATTGCCAGAAGGCTTGGAAGGAGTCAGATATCCTCATTTTCTGTTCTAGAAGGTGCTGGGAGGACCCTCAAAGGGAGGGATCTTAGCAAAGTGAGGAATGTTGTGCTCTCAAAAACTGGTTTCCTTGAATCACTATAA 597 0.3668 MGDKYSLGRQHSGIWKSLRDGDFDEEEVWDVLKNRSDYSSSGVRKFKEKDQSSSLHVPARPSAARMIPRATSSSNSSASSSNEAKVLQQSAPVNVPDWSKIYMINPPKNSASRFDDYDGEDDGDAAANYGGDSDEGGGDENDEYDSKLPPHEFIARRLGRSQISSFSVLEGAGRTLKGRDLSKVRNVVLSKTGFLESL 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01937 198 Pfam Senescence regulator 22 196 IPR007608 -
Cca05g01937 198 MobiDBLite consensus disorder prediction 38 150 - -
Cca05g01937 198 PANTHER EXPRESSED PROTEIN 1 196 - -
Cca05g01937 198 MobiDBLite consensus disorder prediction 40 54 - -
Cca05g01937 198 MobiDBLite consensus disorder prediction 67 95 - -
Cca05g01937 198 PANTHER CYTOSKELETON-REGULATORY COMPLEX PROTEIN END3, PUTATIVE ISOFORM 9-RELATED 1 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01937 Cca-Chr5 39168949 39171054 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01937 - - gmx:100796494 280.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01937 05 39168949 39171054 Cca09g01099 09 32000731 32001312 ECH
Cca05g01937 05 39168949 39171054 Cca05g01937 05 39168949 39171054 ECH
Cca09g01099 09 32000731 32001312 Cca05g01937 05 39168949 39171054 PCT