Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00805 ATGTCTTGCTCCAATCTCACAATGCTTGTGTCCTCCAAACCTTCCCTCTCCGACCCCTCCAACCTCTCCTTCCGCTCCGTCCTCAACCCTTTTCAGCTCCCTTCACAAAACCCAACTTCATGCACCCCTTCACGCTCTTCCTCCACCCAAGTTCAGTGTGGTCTCCGAGAGCTCAGAACCCGAATTGATTCTGTCAAAAACACTCAGAAAATCACCGAGGCAATGAAGCTTGTGGCAGCTGCAAAAGTGAGAAGAGCTCAAGAAGCTGTGGTCAACGCAAGACCCTTCTCAGAGACCCTCGTTGAAGTCCTCTACAACATCAACGAGCAGCTCCAAACCGAGGACGTAGACATTCCTCTAACAAAGGTGAGGCCAGTGAAGAAGGTTGCACTTGTCGTGTGCACCGGCGATCGCGGCCTCTGCGGCGGATTCAACAACTTCATCATTAAGAAAGCTGAGGCCAGAATCAGGGAGTTGACGGCACTTGGTTTGGAATACACTGTCATAAGTGTTGGCAAAAAGGGTAACTCTTATTTCATTCGAAGGCCTTATATACCAGTTGACAGGTTTCTAGAAGGTGGTTCACTTCCAACTGCTAAGGAAGCTCAGGCTATAGCTGATGATGTTTTCTCACTGTTCGTGAGCGAAGAGGTTGACAAAGTGGAGCTTCTGTACACTAAGTTTGTGTCATTGGTGAAGTCAGATCCGGTGATTCACACTTTGCTTCCATTGTCACCAAAGGGAGAGATTTGCGATGTGAATGGTGTGTGTATTGATGCTGCTGAAGATGAGTTCTTCAGGTTGACCACCAAGGAGGGAAGGTTGACTGTGGAGAGAGATGTTGTGAGGACTAAGACTCCGGAATTCTCACCAATTTTGCAGTTTGAGCAAGACCCGGTTCAGATCCTTGATGCTTTGTTGCCTTTGTATTTGAATAGCCAGATATTGAGGGCGTTGCAGGAGTCGCTGGCCAGTGAACTTGCTGCAAGAATGAGTGCTATGAGCAATGCATCGGACAATGCTTCAGACTTGAAGAAGAAATTGTCCACTGTCTACAATAGGGAGCGCCAGGCTAAGATCACTGGCGAAATTCTGGAAATCGTGGCTGGTGCCAATGCCTTGCAATAG 1128 0.4823 MSCSNLTMLVSSKPSLSDPSNLSFRSVLNPFQLPSQNPTSCTPSRSSSTQVQCGLRELRTRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNARPFSETLVEVLYNINEQLQTEDVDIPLTKVRPVKKVALVVCTGDRGLCGGFNNFIIKKAEARIRELTALGLEYTVISVGKKGNSYFIRRPYIPVDRFLEGGSLPTAKEAQAIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPKGEICDVNGVCIDAAEDEFFRLTTKEGRLTVERDVVRTKTPEFSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELAARMSAMSNASDNASDLKKKLSTVYNRERQAKITGEILEIVAGANALQ 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00805 375 Pfam ATP synthase 55 374 IPR000131 GO:0015986|GO:0045261|GO:0046933
Phco11g00805 375 CDD F1-ATPase_gamma 55 371 IPR000131 GO:0015986|GO:0045261|GO:0046933
Phco11g00805 375 MobiDBLite consensus disorder prediction 1 20 - -
Phco11g00805 375 FunFam ATP synthase gamma chain, chloroplastic 122 245 - -
Phco11g00805 375 PRINTS ATP synthase gamma subunit signature 321 340 IPR000131 GO:0015986|GO:0045261|GO:0046933
Phco11g00805 375 PRINTS ATP synthase gamma subunit signature 126 145 IPR000131 GO:0015986|GO:0045261|GO:0046933
Phco11g00805 375 PRINTS ATP synthase gamma subunit signature 219 236 IPR000131 GO:0015986|GO:0045261|GO:0046933
Phco11g00805 375 PRINTS ATP synthase gamma subunit signature 352 373 IPR000131 GO:0015986|GO:0045261|GO:0046933
Phco11g00805 375 Gene3D - 122 245 - -
Phco11g00805 375 ProSitePatterns ATP synthase gamma subunit signature. 360 373 IPR023632 -
Phco11g00805 375 Gene3D ATP synthase, gamma subunit, helix hairpin domain 53 121 - -
Phco11g00805 375 Gene3D ATP synthase, gamma subunit, helix hairpin domain 275 374 - -
Phco11g00805 375 PANTHER ATP SYNTHASE GAMMA CHAIN 5 374 IPR000131 GO:0015986|GO:0045261|GO:0046933
Phco11g00805 375 NCBIfam ATP synthase F1 subunit gamma 54 374 IPR000131 GO:0015986|GO:0045261|GO:0046933
Phco11g00805 375 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 54 374 IPR035968 GO:0015986|GO:0045261|GO:0046933
Phco11g00805 375 Hamap ATP synthase gamma chain [atpG]. 52 374 IPR000131 GO:0015986|GO:0045261|GO:0046933
Phco11g00805 375 FunFam ATP synthase gamma chain, chloroplastic 53 120 - -
Phco11g00805 375 FunFam ATP synthase gamma chain, chloroplastic 271 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00805 Phco-Chr11 5892181 5893308 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g00805 11 5892181 5893308 Phco11g00805 11 5892181 5893308 ECH