Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01938 ATGTCTGGAGCCTCTCTCCCAAACGCCAGCTTCAGCCTTCCATTTTCAACCATGTCAGCCCAAGCCCGGCCCCCCTTCCCCGCCCAACTCACAAACCCCGCTCCCCATCATCCCCACTGGGCTTCCTTGCAGGCCGACATTGAAGCCCACCTCAAACAAACCATGCCACTCAAACAACCTCACGAGGTTTTCAACCCCATGCACCACCTCGTTTTCTCCGCCCCCCGCACCACCGTCCCCGCTCTGTGCCTCGCCGCGTGCGAGCTCGTCGGCGGCCACCGCCAGGAAGCCATGCCCGCGGCCTCGGCCTTGTTACTCAACCTGGCTAATGCGCATGCCCACGAGCACCTCCTCCTCAGTGACAGGGCCAGGCCCGGTGATGGTTATGGCGCCAACATAGAACTTCTAACCGGAGACGGGATTGTCCCGTTTGGGTTTGAGTTGTTGGCGAGATCCGACGACCCGGCCCATGAGAAGTCGGAGCGGATCCTGCGCGTGATAATTGAGATATCACGTGCGGTGGGGTCGGAGGGGTTGCAAAAAGCGCTGTACATGGAAAATACGTTGGAGGATGAATCGGACGGCGAGGATCCGCGCCACGTGGAAAGCATGAGGGTTGTTGTGGAGAAAAAGGAAGGTGGGATGCACGCGTGCGGGGCTGCGTGTGGGGCGGTGTTGGGAGGTGGGAGTGAGGAGGAAATCGAGAGGTTGAGAAAGTTTGGATATTATGTGGGGATGACACAGGGTATGCTACAGAGGGGACTCCTCCAAGGACTTGAAGACCTCAGAAATCTCGCTTTCAACCAATTGCAATTTTTCAAGGACAGAGGTAACACTTAA 840 0.5774 MSGASLPNASFSLPFSTMSAQARPPFPAQLTNPAPHHPHWASLQADIEAHLKQTMPLKQPHEVFNPMHHLVFSAPRTTVPALCLAACELVGGHRQEAMPAASALLLNLANAHAHEHLLLSDRARPGDGYGANIELLTGDGIVPFGFELLARSDDPAHEKSERILRVIIEISRAVGSEGLQKALYMENTLEDESDGEDPRHVESMRVVVEKKEGGMHACGAACGAVLGGGSEEEIERLRKFGYYVGMTQGMLQRGLLQGLEDLRNLAFNQLQFFKDRGNT 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01938 279 SUPERFAMILY Terpenoid synthases 39 246 IPR008949 -
Cca05g01938 279 Gene3D Farnesyl Diphosphate Synthase 34 279 IPR008949 -
Cca05g01938 279 PANTHER HETERODIMERIC GERANYLGERANYL PYROPHOSPHATE SYNTHASE SMALL SUBUNIT, CHLOROPLASTIC-LIKE 34 276 - -
Cca05g01938 279 PANTHER FARNESYL DIPHOSPHATE SYNTHASE 34 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01938 Cca-Chr5 39182470 39184173 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01938 K13789 - gmx:100170743 313.538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01938 05 39182470 39184173 Cca05g01938 05 39182470 39184173 ECH