Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi18g2046 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g2047 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g2048 . . . . . . . Aed8g1983 . . Ahy19g1933 . Aip09g02252 . . . . . . . . . . . . . . . . . . Cca02g01704 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Ssu7g1444 . . . . . . . . . . . . . . . . . . . Vra8g1713
Vvi18g2049 . . . . . . . . . . . . Aip09g00016 . . . . . . . . . . . . . . Bva09g01894 . . . . . . . . . . . . . . . . . . . . . . . Lal1g0796 . . . . . . . . . . . . . . . . . . . . . . Mal7g0950 . . . . . . . Mtr4g0857 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tpr4g1073 . . . Tsu06g00793 . . . . . . . . . . . . .
Vvi18g2050 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g2051 . . . . . . . . . . . Ahy17g0294 . Aip07g00213 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Pvu8g2828 . . . . . . . . . . . . . . . . . . . . . Vimu1g00722 . . . . . .
Vvi18g2052 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g2053 . . . . . . . . . . . . . Aip07g00211 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Pvu8g2827 . . . . . . . . . . . . . . . . . . . . . Vimu1g00724 . . . . . .
Vvi18g2054 . . . . . Adu07g00606 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Pvu8g2825 . . . . . Spst8g00936 . . . . . . . . . . . . . . . Vimu1g00365 . . . . . .
Vvi18g2055 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Pvu Pvu8g2827 Chr8 58313883 58316885 -
Vimu Vimu1g00724 Chr1 4707259 4709631 +
Aip Aip07g00211 Chr07 1823381 1826627 +
Aed Aed8g1983 Chr8 24327687 24333637 -
Cca Cca02g01704 Chr02 36004701 36010982 -
Ssu Ssu7g1444 Chr7 30914346 30919352 +
Vra Vra8g1713 Chr8 34283328 34290272 -
Lal Lal1g0796 Chr1 5420440 5422767 +
Vvi Vvi18g2046 Chr18 28358087 28360311 -
Vvi Vvi18g2047 Chr18 28414670 28423190 -
Vvi Vvi18g2048 Chr18 28430031 28435243 -
Aed Aed8g1983 Chr8 24327687 24333637 -
Ahy Ahy19g1933 Chr19 112341482 112343837 -
Aip Aip09g02252 Chr09 103793206 103795371 -
Cca Cca02g01704 Chr02 36004701 36010982 -
Ssu Ssu7g1444 Chr7 30914346 30919352 +
Vra Vra8g1713 Chr8 34283328 34290272 -
Vvi Vvi18g2049 Chr18 28439212 28443551 -
Aip Aip09g00016 Chr09 170196 173354 -
Bva Bva09g01894 Chr09 14681047 14687719 -
Lal Lal1g0796 Chr1 5420440 5422767 +
Mal Mal7g0950 Chr7 26293595 26296762 -
Mtr Mtr4g0857 Chr4 10976409 10979910 -
Tpr Tpr4g1073 Chr4 10345698 10348417 -
Tsu Tsu06g00793 Chr06 7081581 7086500 -
Vvi Vvi18g2050 Chr18 28445619 28452301 +
Vvi Vvi18g2051 Chr18 28461775 28464729 +
Ahy Ahy17g0294 Chr17 2795496 2797931 +
Aip Aip07g00213 Chr07 1860261 1863044 +
Pvu Pvu8g2828 Chr8 58335499 58338558 -
Vimu Vimu1g00722 Chr1 4682973 4685786 +
Vvi Vvi18g2052 Chr18 28468499 28469209 -
Vvi Vvi18g2053 Chr18 28472204 28475143 +
Aip Aip07g00211 Chr07 1823381 1826627 +
Pvu Pvu8g2827 Chr8 58313883 58316885 -
Vimu Vimu1g00724 Chr1 4707259 4709631 +
Vvi Vvi18g2054 Chr18 28482879 28494713 +
Adu Adu07g00606 Chr07 6516021 6518795 -
Pvu Pvu8g2825 Chr8 58300481 58306015 -
Spst Spst8g00936 Chr8 8278977 8280135 -
Vimu Vimu1g00365 Chr1 2170298 2173393 +
Vvi Vvi18g2055 Chr18 28495705 28503022 -