Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00724 ATGGGTTGGATTTTAGCATCATACTTGATCTTCTTCCAACTTTTGCTTCTTCATTTTTCTTCATACAATTGTTTGTCGTGCAATTCTGATGACAAATCTGTCCTGTTGCAATTCAAAAATTCAGTTGCTGTTGTGCAGTCATCACCTACGTTTGATGTTTGTGTCTCGCATTCTCCAAAAACAGCAACTTGGAACAATGAAACAGATTGTTGCGGGTGGGATGGTGTCGTATGTGACTCTGAGTTAGGTCATGTGATTGGCCTCGACCTTTCCTGCAGTCCTCTTAAAGGTGAGCTACTTGGTCCCAATAGTTCCATTTTCAAGCTAAGACACCTTCAACAGCTTAACCTACTTTCTGATGATTTAGATGGATCTCCAATACACCCTGCAATTGGTGATCTTGTGAGTCTCACTGATTTAACTTTGTATTACCTTAGAATTAGTGGTGATGTTCCCTCCACAATCTCTCACTTGTCAAAATTAGAACATCTTGATCTCACTGTAGAATCTCTTGATTCCACACCGAGACTTGATTTATACACTTGGAACAGACTCATTCACAACGCCACTAATTTAAGAGAAATTTCTTTACGTGGGGTGAACATGTCTTCTCTGGGAGAGAGCTCTTTGTCATTGTTAACCAATTTGTCATCCTCTTTGCTTTCTCTCCATCTCACGGATACCAAACTCCAAGGGAAATGGCCAACTGAGATCTTCCGTTTACCCAATCTCCAAGAAATACGCATATTAACGAATGAAAACCTGAGAGGTGAACTTCCAAACTCCAACTGGACTACTCCACTAAAAACCTTGTTTATTTATCAAACTAATTTCTCAGGAGACATTCCTGATTCCATAGCCCACTTGAAATCTCTTTACTCATTGTTTCTTTTTGAATCCAATTTTGATGGATTTATTCCACCATCATTGTTTGATCTTACTCACCTTATTTTCTTATATTTATCAGATAATAAATTAGTTGGCCCAATTCCAACCCAAATCATCAAACTCTCTAATTTATTGCTCCTAGATTTGAGTGGTAACATGTTAAACGGATCAATTCCTCTTGGGTGTTATTCTTTGCCTTCTTTATTCATCTTGGATCTTAGTAACAATCAACTCACAGGGTCAATTGTTGAGTTCTCAACTAATTCTTTGAAATTTTTGAAACTTTCTAATAATAAACTGCAGGGCTATTTTCCAAATTTCTTAGCTCCACATATGCAAGTTTTAGATATTTCTCACAACAACTTGACAGGCCTTATTCCAAAATCTTTGGGAACATTTTTTTTTCTTTGGGCGTTGGATTTGCAAGACAACAACCTTCACGGAAGCATACCTGATAACTTTTCTGAAGGAAATGCACTTGAGACTATAAAGTTAAATGGAAATCACTTGAAGGGACCCTTACCACGGACTTTGAATCACTGTACAAACCTTGAAGTTCTGGACCTTGGAAATAATGACATAGAGGATAAATTTCCCTATTGGTTAAAAACTTTGCCAACTTTACAGGTACTCAGTTTGCAGTCAAATAAATTTTATGGTAACATCACTTCTTTAGGCACCAAACTTTCATTCCCCAGGTTGAGGATTTTTGACATCTCCAATAACTATTTTATCGGACCCTTGCCAACATCATATATCGTCAACTTTCAAGAAATGATGAATGTGAATCACAGCCAAACTGGTCCGAAATATATAGGCAACTATCCATTATATAATGATTCGATGATGATTGTGATGAAAGGGTTACACTGGGAACTCACGAGGATATTGACTGCTTTGACACTCATTAATTTGTCAAATAATATGTTTGAAGGAGAAATTCCAAAAGCCATTGGAGAATTGAAGTCTCTCATAGGACTTAACCTTTCACACAATAAAATAACTGGTACCATTCCAGTGTCATTGAGTAATTTAAGAAATTTAGAATGGTTGGACCTCTCATGCAACCAATTGAAGGGTGAGATTCCCATGACTCTGACAAATTTGAATTCTCTTGCTGTCTTGAACCTTTCACAAAATCAATTGGAGGGAGTGATACCTACGGGTAGACAGTTTGACACATTTGATAATATTTCCTATGTTGGAAATCCAATGCTGTGTGGATTCCCCTTGTCAAGATCTTGCAAAGGGAAAAAAGAAAGGTCAAAAAGTTCAACATTTGATGAAGAAGAATCAGGATTTGGGTGGAAAGCTGTTGTAATCGGGTATGGATGTGGGACAATCTTTGGAATAATATTGGGTTATAATGTATTCTTTGCTAGAAAACCCCATTGGCTTGCAAGACTCGTTGAAGTTGTATTAAAGGTGAAACTTCCCAGAACAAACAATAGAAAGCGTGTTATTCGTTTGGGAAGAAAAAATTAG 2373 0.3713 MGWILASYLIFFQLLLLHFSSYNCLSCNSDDKSVLLQFKNSVAVVQSSPTFDVCVSHSPKTATWNNETDCCGWDGVVCDSELGHVIGLDLSCSPLKGELLGPNSSIFKLRHLQQLNLLSDDLDGSPIHPAIGDLVSLTDLTLYYLRISGDVPSTISHLSKLEHLDLTVESLDSTPRLDLYTWNRLIHNATNLREISLRGVNMSSLGESSLSLLTNLSSSLLSLHLTDTKLQGKWPTEIFRLPNLQEIRILTNENLRGELPNSNWTTPLKTLFIYQTNFSGDIPDSIAHLKSLYSLFLFESNFDGFIPPSLFDLTHLIFLYLSDNKLVGPIPTQIIKLSNLLLLDLSGNMLNGSIPLGCYSLPSLFILDLSNNQLTGSIVEFSTNSLKFLKLSNNKLQGYFPNFLAPHMQVLDISHNNLTGLIPKSLGTFFFLWALDLQDNNLHGSIPDNFSEGNALETIKLNGNHLKGPLPRTLNHCTNLEVLDLGNNDIEDKFPYWLKTLPTLQVLSLQSNKFYGNITSLGTKLSFPRLRIFDISNNYFIGPLPTSYIVNFQEMMNVNHSQTGPKYIGNYPLYNDSMMIVMKGLHWELTRILTALTLINLSNNMFEGEIPKAIGELKSLIGLNLSHNKITGTIPVSLSNLRNLEWLDLSCNQLKGEIPMTLTNLNSLAVLNLSQNQLEGVIPTGRQFDTFDNISYVGNPMLCGFPLSRSCKGKKERSKSSTFDEEESGFGWKAVVIGYGCGTIFGIILGYNVFFARKPHWLARLVEVVLKVKLPRTNNRKRVIRLGRKN 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00724 790 Pfam Leucine rich repeat N-terminal domain 29 79 IPR013210 -
Vimu1g00724 790 Pfam Leucine rich repeat 456 514 IPR001611 GO:0005515
Vimu1g00724 790 Pfam Leucine rich repeat 595 654 IPR001611 GO:0005515
Vimu1g00724 790 ProSiteProfiles Leucine-rich repeat profile. 643 666 IPR001611 GO:0005515
Vimu1g00724 790 Gene3D Ribonuclease Inhibitor 26 264 IPR032675 -
Vimu1g00724 790 SUPERFAMILY L domain-like 384 708 - -
Vimu1g00724 790 SUPERFAMILY L domain-like 68 401 - -
Vimu1g00724 790 SMART LRR_typ_2 361 384 IPR003591 -
Vimu1g00724 790 SMART LRR_typ_2 313 337 IPR003591 -
Vimu1g00724 790 SMART LRR_typ_2 665 688 IPR003591 -
Vimu1g00724 790 SMART LRR_typ_2 641 664 IPR003591 -
Vimu1g00724 790 SMART LRR_typ_2 593 617 IPR003591 -
Vimu1g00724 790 SMART LRR_typ_2 501 528 IPR003591 -
Vimu1g00724 790 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 379 470 - -
Vimu1g00724 790 Pfam Leucine Rich Repeat 409 427 IPR001611 GO:0005515
Vimu1g00724 790 FunFam Tyrosine-sulfated glycopeptide receptor 1 472 716 - -
Vimu1g00724 790 Gene3D Ribonuclease Inhibitor 356 720 IPR032675 -
Vimu1g00724 790 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1-LIKE-RELATED 321 404 IPR046956 -
Vimu1g00724 790 PRINTS Leucine-rich repeat signature 665 678 - -
Vimu1g00724 790 PRINTS Leucine-rich repeat signature 364 377 - -
Vimu1g00724 790 Gene3D Ribonuclease Inhibitor 265 336 IPR032675 -
Vimu1g00724 790 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 283 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00724 Vimu-Chr1 4707259 4709631 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00724 10 768 Receptor kinase-like Gene Family AT3G05660 34.250 1.54e-111 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00724 - - vum:124845856 1082.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00724 1 4707259 4709631 Vimu1g00724 1 4707259 4709631 ECH