Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g2053 ATGTCTAAACTCCTCCTCTATTTTCTTTTCTTCCTCTCGTCCTCTCAACTTCTTTCCACCTCTTTCTCTTTCTCTAATTCCACCAAACTCTGCCCTGGTCACCAATCTCGTGCTCTGCTCCACCTTAGGAAATCGTTTTCCGTTATTGATAATTCCAGTTTTTGGGGATGCGATTACTATGACCTCAGTTGCAGTTGGCTCTATGGCACCATCCATTCCAATAGTACCCTCTTTCTTTTTCCCCACCTGCGAAGGCTTAACCTTGCTTTCAATGACTTTAATGGGTCTTCTGTTTCCACTAGGTTTGGCCGCTTCTCAAGCTTGACCCATCTCAACCTCTCTGAATCTCTATTTTCAGGCCTAATTTCACCAGAAATTTCTCACCTCGCCAACTTGGTTTCACTCGATCTGTCTGGGAATGGAGCAGAATTTGCCCCGCATGGCTTCAATTCTCTACTTCTAAATTTAACCAAGTTGCAGAAGCTTCACCTTGGAGGTATATCCATCTCTTCAACTTTGGATCTCTCTATTTGCCAATTCTTAGGGTCCATCCCCACTTCCCTAGAGAACCTTAAACAAATCACATCCTTGAACCTTATTGGGAATCATTTTAGTGGTAAAATTCCAAATATTTTTAATAACCTTAGAAATTTAATTTCACTAGGACTTTCTAACAACAATTTTAGTGGTCATTTTCCACCATCTATTGGAAATCTAACAAACCTTTATGAGTTAGACTTCTCCAATAATCAGCTAGAAGGATTACATGGGCCAATTCCAAGTTCAATATTTAAGCTTGTAAACCTTAGATATCTTTATCTTTCTTCAAATAACTTGAGTGAGGTTTTGGAGACAAACAAGTTTGGAAACCTTAGAAATCTTATTGAGCTTGATCTCTCAAACAACATGCTTTTATTGACAACCTCTGGCAATTCCAACTCCATTTTACCTAACATTGAGTCGCTAGACCTTTCAAACAATAAGATTAGTGGAGTATGGTCATGGAACATGGGAAATGATACACTATGGTACTTGAATCTCTCTTATAACTCAATAAGTGGGTTTAAGATGCTTCCATGGAAAAATATAGGTATTCTAGATCTTCATTCCAACTTGCTGCAAGGACCACTTCCAACTCCTCCAAATTCTACATTTTTCTTTTCAGTCTCCCATAACAAATTGAGTGGAGAAATCTCATCGTTGATTTGCAGAGCGAGTTCCATGGAAATTCTTGATTTGTCTGACAACAATTTGAGTGGCAGGCTTCCTCATTGTTTGGGAAATTTTAGTAAATATCTCTCAGTTTTGAATTTACGAAGGAATCGATTTCATGGCAACATTCCTCAAACATTTTTAAAGGGCAATGCTATCAGGGATCTTGATTTCAACGATAATCAATTGGATGGCCTAGTACCTCGATCTTTGATCATTTGTAGAAAACTTGAAGTTCTAGACCTTGGGAATAATAAGATAAATGATACATTTCCCCATTGGTTGGGAACTCTTTCAAAGTTGCAAGTTCTTGTTTTGCGCTCTAATAGTTTCCATGGTCATATAAGGCATTCCAAGATCAAATCCCCATTCATGAGCCTAAGAATCATTGATCTTGCTCACAATGATTTTGAGGGTGACTTGCCTGAATTGTATTTGAGAAGTTTGAAAGCAATAATGAATGTAAATGAAGGCAACATGACAAGAAAATATATGGGGAACAATTATTATCAAGATTCCATAATGGTGACAATCAAGGGGTTGGAGATTGAATTTGTGAAAATCTTGAATACTTTCACAACAATTGATTTATCAAGCAATAAATTCCAAGGAGAGATTCCCAAGTCCATTGGAAATCTTAATTCCCTTCGAGGGCTCAATTTGTCTCATAACAACCTTGGAGGACATATTCCATCACCTTTAGGGAATTTGAAGTCGCTTGAATCATTGGACCTCTCTTCAAACAAGCTCATTGGCAGAATTCCTCAAGAATTAACAAGTTTGACATTTCTTGAAGTTTTGAATCTTTCCCAAAATAATCTCACTGGTTTTATACCTCGAGGCAATCAGTTTGAGACATTTGGAAATGATTCATACAACGAGAACTCAGGGCTATGTGGATTTCCGTTGTCAAAGAAATGCACAGCTGATGAAACACTAGAGCCTTCAAAAGAAGCGAATACAGAGTTTGATGGTGGATTTGATTGGAAAATCACATTGATGGGATATGGATGTGGATTGGTTATTGGGTTGTCTCTTGGGTGTCTTGTTTTCTTAACTGGGAAACCTGAATGGTTGACAAGGATGGTAGAAGAGAACATTCACAAGACGATCACAAGGTCTAAAAGAAGTACTCGCAGGAAAGGAGCAAGAAGAAAGTAG 2373 0.3801 MSKLLLYFLFFLSSSQLLSTSFSFSNSTKLCPGHQSRALLHLRKSFSVIDNSSFWGCDYYDLSCSWLYGTIHSNSTLFLFPHLRRLNLAFNDFNGSSVSTRFGRFSSLTHLNLSESLFSGLISPEISHLANLVSLDLSGNGAEFAPHGFNSLLLNLTKLQKLHLGGISISSTLDLSICQFLGSIPTSLENLKQITSLNLIGNHFSGKIPNIFNNLRNLISLGLSNNNFSGHFPPSIGNLTNLYELDFSNNQLEGLHGPIPSSIFKLVNLRYLYLSSNNLSEVLETNKFGNLRNLIELDLSNNMLLLTTSGNSNSILPNIESLDLSNNKISGVWSWNMGNDTLWYLNLSYNSISGFKMLPWKNIGILDLHSNLLQGPLPTPPNSTFFFSVSHNKLSGEISSLICRASSMEILDLSDNNLSGRLPHCLGNFSKYLSVLNLRRNRFHGNIPQTFLKGNAIRDLDFNDNQLDGLVPRSLIICRKLEVLDLGNNKINDTFPHWLGTLSKLQVLVLRSNSFHGHIRHSKIKSPFMSLRIIDLAHNDFEGDLPELYLRSLKAIMNVNEGNMTRKYMGNNYYQDSIMVTIKGLEIEFVKILNTFTTIDLSSNKFQGEIPKSIGNLNSLRGLNLSHNNLGGHIPSPLGNLKSLESLDLSSNKLIGRIPQELTSLTFLEVLNLSQNNLTGFIPRGNQFETFGNDSYNENSGLCGFPLSKKCTADETLEPSKEANTEFDGGFDWKITLMGYGCGLVIGLSLGCLVFLTGKPEWLTRMVEENIHKTITRSKRSTRRKGARRK* 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g2053 790 ProSiteProfiles Leucine-rich repeat profile. 643 666 IPR001611 GO:0005515
Vvi18g2053 790 Gene3D Ribonuclease Inhibitor 176 254 IPR032675 -
Vvi18g2053 790 SMART LRR_typ_2 191 214 IPR003591 -
Vvi18g2053 790 SMART LRR_typ_2 641 664 IPR003591 -
Vvi18g2053 790 SMART LRR_typ_2 266 290 IPR003591 -
Vvi18g2053 790 SMART LRR_typ_2 215 238 IPR003591 -
Vvi18g2053 790 SMART LRR_typ_2 478 502 IPR003591 -
Vvi18g2053 790 SMART LRR_typ_2 316 338 IPR003591 -
Vvi18g2053 790 SMART LRR_typ_2 665 688 IPR003591 -
Vvi18g2053 790 SMART LRR_typ_2 129 151 IPR003591 -
Vvi18g2053 790 SMART LRR_typ_2 239 262 IPR003591 -
Vvi18g2053 790 Pfam Leucine rich repeat 597 654 IPR001611 GO:0005515
Vvi18g2053 790 Pfam Leucine rich repeat 81 140 IPR001611 GO:0005515
Vvi18g2053 790 Pfam Leucine rich repeat 433 491 IPR001611 GO:0005515
Vvi18g2053 790 Pfam Leucine rich repeat 268 329 IPR001611 GO:0005515
Vvi18g2053 790 SUPERFAMILY L domain-like 375 708 - -
Vvi18g2053 790 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1-LIKE-RELATED 30 712 IPR046956 -
Vvi18g2053 790 SMART LRR_sd22_2 239 257 - -
Vvi18g2053 790 SMART LRR_sd22_2 266 293 - -
Vvi18g2053 790 SMART LRR_sd22_2 316 334 - -
Vvi18g2053 790 SMART LRR_sd22_2 478 495 - -
Vvi18g2053 790 SMART LRR_sd22_2 641 664 - -
Vvi18g2053 790 SMART LRR_sd22_2 593 619 - -
Vvi18g2053 790 SMART LRR_sd22_2 405 431 - -
Vvi18g2053 790 Pfam Leucine Rich Repeat 409 429 IPR001611 GO:0005515
Vvi18g2053 790 Pfam Leucine Rich Repeat 668 684 IPR001611 GO:0005515
Vvi18g2053 790 SUPERFAMILY L domain-like 70 534 - -
Vvi18g2053 790 Gene3D Ribonuclease Inhibitor 310 719 IPR032675 -
Vvi18g2053 790 Gene3D Ribonuclease Inhibitor 29 175 IPR032675 -
Vvi18g2053 790 FunFam Leucine-rich repeat receptor-like protein kinase TDR 383 713 - -
Vvi18g2053 790 Gene3D Ribonuclease Inhibitor 255 309 IPR032675 -
Vvi18g2053 790 PRINTS Leucine-rich repeat signature 319 332 - -
Vvi18g2053 790 PRINTS Leucine-rich repeat signature 641 654 - -
Vvi18g2053 790 ProSiteProfiles Leucine-rich repeat profile. 268 289 IPR001611 GO:0005515
Vvi18g2053 790 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 185 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g2053 Vvi-Chr18 28472204 28475143 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g2053 61 770 Receptor kinase-like Gene Family AT3G05660 38.896 1.44e-139 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g2053 - - vvi:100255139 954.51