Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g2051 ATGTCTAAACTCCTCCTCCTCCTCTGTTTTCTTTTCTTCCTCTCGTTTTCTCAACTTTTTTCCTCCTCTTTCTCTTTCTCTAATTCCACCAAACTGTGCCCGCATCACCAGGCCATTGCTCTGCTCCACTTTAAGCAATCCTTTTCTATTGATAATTCCAAGTCTTGGAAGAAGGGTAGTGATTGCTGCTCATGGGATGGGGTCACATGTGATTGGGTGACAGGCCATGTAATTGAGCTGGACCTCAGTTGCAGTTGGCTCTTTGGCACCATCCATTCCAACACTACCCTCTTCCATCTTCCTCATCTACAAAGGCTCAACCTGGCTTTCAACAACTTTCGTGGGTCCTCTATTTCAGCTGGGTTTGGTCGTTTCTCAAGCTTGACGCATCTCAATCTCTGTGACTCTGAATTTTCAGGCCCAATTTCACCAGAAATCTCTCACCTCTCCAACTTGGTTTCACTTGATCTCTCTTGGAATATTGACACAGAATTTGCCCCGCATGGCTTCGATTCTCTAGTTCAAAATTTAACCAAATTGCAAAAGCTTCACCTTGGAGGTATTTCCATCTCTTCAATTTTTCCTAAGTTCTTGCTAAATTGGGCTTCTTTGGTATCATTAGATCTCCTTGATGGTGCATTGCATGGGAGATTCCCTGACCATGACATTCACCTTCCGAAACTCGAGGTTCTCGACTTACGGTGGAATAATGGTCTTAGTGGAACCTTTCCACAATTTAGTGAGAACAATTCCCTTACGGAGTTGTATTTATCATCCAAAAATTTCAGTGGAGAGCTTCCCGCTTCAATTGGTAATCTAAAGTCTTTAAAGATTTTGGTTCTCCACAATTGTGGATTCTCAGGGTCCATCCCTTCTTCAATTGGAAATCTGAAAAATTTAATTTCATTAGGACTTGCTAGCAACAATTTTAGTGGGCAGCTTCCACCATCAATTGGAAATCTCACAAACCTTCAGGACTTATATTTCTCTGATAACTTTAACATGTTCAACGGGACAATACCATCTTGGTTGTATACTATGCCATCATTGGTGCAATATCTTTTTCTTTCTTCAAATAACTTCAGTGGCGTTTTGGAGACAAGCAACTTTGGAAAACTTAGAAACCTCACTTCGCTTGATCTCTCAAACAACATGCTCTCATTGACAACGTCCGACGATTCCAAGTCCATGTTACCCTACATTGAGAGTCTAGACCTTTCAAACAATAACATTAGTGGAATATGGTCATGGAATATGGGAAAGAATACATTGCAGTACTTGAATCTCTCTTATAACTTAATAAGTGGGTTTGAGATGCTCCCATGGAAAAATTTATATATTCTAGATCTTCATTCCAACTTGTTGCAAGGACCACTTCCAACTCCTCCAAATTCTACATTTTTCTTTTCAGTTTCCCATAACAAATTGAGTGGAGAAATCTTATCGTTGTTTTGCAAAGCGAGTTCCATGAGAATTCTTGATTTAAAACTTGAAGTTCTAGACCTTGGGAATAATAAGATAAATGATACATTTCCCCATTGGTTGGGAACTCTTCCAGAGTTGCAAGTTCTTGTTTTGCGCTCTAATAGTTTCCATGGTCATATAGGGTGTTCCAAAATCAAATCCCCATTCATGAGCCTAAGAATCATTGATCTTGCTTACAATGATTTCGAGGGTGACTTGCCTGAAATGTATCTGAGAAGTTTGAAAGCGACAATGAATGTAGACGAAGGCAACATGACAAGAAAATATATGGGGGACAGTTATTATCAAGATTCCGTAATGGTGACAATCAAGGGGTTGGAGATTGAATTTGTGAAAATCTTGAATACGTTCACAACAATTGATTTATCAAGCAATAAATTCCAAGGAGAGATTCCAAAGTCCATTGGAAATCTTAATTCGCTTCGAGGGCTCAATTTGTCTCATAACAGCCTTGCAGGACATATCCCATCATCTTTCAAAAATTTGAAGTTGCTTGAATCATTGGACCTCTCTTCAAACAAGCTCATTGGGAGCATTCCTCAAGAATTAACAAGTTTGACATTTCTTGAAGTTTTGAATCTTTCTGAAAACCATCTTACAGGATTTATACCTCGAGGAAATCAGTTTGACACTTTTGGAAATGATTCATACAGTGAGAACTCAGGGTTGTGTGGATTTCCATTGTCAAAGAAATGCATAACTGATGAAGCATCGGAATCTTCAAAGGAAGCGGATGAAGAGTTTGATGGTGGATTTGATTGGAAAATCACATTGATGGGATATGGATGTGGATTGGTTATTGGGTTGTCTCTTGGGTGTCTCATTTTCTTAACTGGGAAACCTAAACGGTTTGTCTGGTTTATTGAAGAGAACATTCACAAAAAGATCAGAAGATCTACAAGGAGCACTTGTAGGCAAGGAGCAAGAAGAAATTAA 2421 0.392 MSKLLLLLCFLFFLSFSQLFSSSFSFSNSTKLCPHHQAIALLHFKQSFSIDNSKSWKKGSDCCSWDGVTCDWVTGHVIELDLSCSWLFGTIHSNTTLFHLPHLQRLNLAFNNFRGSSISAGFGRFSSLTHLNLCDSEFSGPISPEISHLSNLVSLDLSWNIDTEFAPHGFDSLVQNLTKLQKLHLGGISISSIFPKFLLNWASLVSLDLLDGALHGRFPDHDIHLPKLEVLDLRWNNGLSGTFPQFSENNSLTELYLSSKNFSGELPASIGNLKSLKILVLHNCGFSGSIPSSIGNLKNLISLGLASNNFSGQLPPSIGNLTNLQDLYFSDNFNMFNGTIPSWLYTMPSLVQYLFLSSNNFSGVLETSNFGKLRNLTSLDLSNNMLSLTTSDDSKSMLPYIESLDLSNNNISGIWSWNMGKNTLQYLNLSYNLISGFEMLPWKNLYILDLHSNLLQGPLPTPPNSTFFFSVSHNKLSGEILSLFCKASSMRILDLKLEVLDLGNNKINDTFPHWLGTLPELQVLVLRSNSFHGHIGCSKIKSPFMSLRIIDLAYNDFEGDLPEMYLRSLKATMNVDEGNMTRKYMGDSYYQDSVMVTIKGLEIEFVKILNTFTTIDLSSNKFQGEIPKSIGNLNSLRGLNLSHNSLAGHIPSSFKNLKLLESLDLSSNKLIGSIPQELTSLTFLEVLNLSENHLTGFIPRGNQFDTFGNDSYSENSGLCGFPLSKKCITDEASESSKEADEEFDGGFDWKITLMGYGCGLVIGLSLGCLIFLTGKPKRFVWFIEENIHKKIRRSTRSTCRQGARRN* 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g2051 806 ProSiteProfiles Leucine-rich repeat profile. 423 444 IPR001611 GO:0005515
Vvi18g2051 806 Gene3D Ribonuclease Inhibitor 319 394 IPR032675 -
Vvi18g2051 806 Gene3D Ribonuclease Inhibitor 170 249 IPR032675 -
Vvi18g2051 806 FunFam Tyrosine-sulfated glycopeptide receptor 1 483 732 - -
Vvi18g2051 806 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 168 418 - -
Vvi18g2051 806 Pfam Leucine rich repeat 613 670 IPR001611 GO:0005515
Vvi18g2051 806 SUPERFAMILY L domain-like 352 709 - -
Vvi18g2051 806 Gene3D Ribonuclease Inhibitor 30 120 IPR032675 -
Vvi18g2051 806 PRINTS Leucine-rich repeat signature 401 414 - -
Vvi18g2051 806 PRINTS Leucine-rich repeat signature 657 670 - -
Vvi18g2051 806 Gene3D Ribonuclease Inhibitor 250 318 IPR032675 -
Vvi18g2051 806 Gene3D Ribonuclease Inhibitor 121 169 IPR032675 -
Vvi18g2051 806 SUPERFAMILY L domain-like 61 387 - -
Vvi18g2051 806 SMART LRR_typ_2 297 321 IPR003591 -
Vvi18g2051 806 SMART LRR_typ_2 347 371 IPR003591 -
Vvi18g2051 806 SMART LRR_typ_2 100 123 IPR003591 -
Vvi18g2051 806 SMART LRR_typ_2 657 680 IPR003591 -
Vvi18g2051 806 SMART LRR_typ_2 177 200 IPR003591 -
Vvi18g2051 806 SMART LRR_typ_2 225 245 IPR003591 -
Vvi18g2051 806 SMART LRR_typ_2 373 396 IPR003591 -
Vvi18g2051 806 SMART LRR_typ_2 398 420 IPR003591 -
Vvi18g2051 806 SMART LRR_typ_2 633 656 IPR003591 -
Vvi18g2051 806 SMART LRR_typ_2 149 172 IPR003591 -
Vvi18g2051 806 SMART LRR_typ_2 681 704 IPR003591 -
Vvi18g2051 806 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1-LIKE-RELATED 32 496 IPR046956 -
Vvi18g2051 806 Pfam Leucine rich repeat N-terminal domain 36 71 IPR013210 -
Vvi18g2051 806 Gene3D Ribonuclease Inhibitor 396 736 IPR032675 -
Vvi18g2051 806 Pfam Leucine Rich repeat 99 119 IPR001611 GO:0005515
Vvi18g2051 806 Pfam Leucine Rich repeat 421 435 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g2051 Vvi-Chr18 28461775 28464729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g2051 5 784 Receptor kinase-like Gene Family AT3G05660 35.941 6.11e-124 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g2051 - K13470 vvi:100255139 767.303