Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00365 ATGGAGTCATGGGTGGGGTGGTTGCTTCTTCTATGTTGCCATATGTTCTTCTTTCACTTCTCATTCTCCCATTCCTTATGTCATCCCCACGATAAAATTGCCTTGCTCCAATTCAAAACCTCTAATACTTTTTCTTTTGGGTCAGACGAGACCTCTCTCACTTATGATGATGCCACTTATGCTGCATGCAGTGATATGGATCCAAAGACAGCAACATGGAAAAATGAGACAGATTGTTGCTCATGGGTTGGGGTTTCTTGTCACCCCATTTCTGGTCGTGTCATAGGCCTCGATGTCTCATGCAGTGGTCTTTTCGGTGCAATCCATTCCAATAATACTCTTTTTCATCTTTCTCATCTCCAATCACTTAATCTTGCTTCCAATTTTTTCTTCAACTTTAAACTTTCAACCCTCTTTGATGGGTTGGTGAGCCTTACACGCCTCAATTTGTCAAATTCTTTCCTTATAAGTGAAGTTCCTTCTCAAATCTCACAACTTTCCAAATTAGAATCACTTGATCTCTCTCATAATTTCAGGTTATGGTGGAAAGAAAGCAGTTGGAAGAAGTTCCTCCAAAACGCAACATTTTTAAAGGAGCTTATTTTGGATGATGTAGATATGGCTCTAAGCTCAATGAGGCCACTCAATCAGTCTACATCTTTAGTTAGTCTTAGTCTCAGTAACACCGAAGTATGGGGAAACTTGAAAAATGACATCTTATGCTTACCAAAACTTCAACGGTTGCACTTTTCATATAATTACGGTCTCAATGGCCAACATCTTCCCAACTTCAGCTGCAATGGTGCTTCTCTCACTATATTGGATCTTTCATCTAATCAATTTGAGGGGTCAATCCCTGCTTCTTTCTCCAATCTCACGCATCTTACTTTCCTTGATCTCTCAGATAACATCTATCTCAAAGGTTCAATTCCCTCCTCCCTCTTAACCTTTCCAAGTCTAACTTTTCTAGATCTTGGATTCAATAAATTCAGTGGCCAAATCCCAAATGTCTTTCCCCAATCAAATAGTTTTGAAAAACTAGATTTGAGTCATAACAATATAGAAGGTGAGCTACCATCAACACTTTCAAATCTCCAACGTCTCATTTTCTTGGATCTTTCAAAAAATAAATTTAGTGGTCAAATTCCATCCTCAATTTCAAATCTTCAACGTCTTATTCACTTGGATCTTTCACATAATGAATTTAAAGGCCAAATTCCATCCTCACTTTCAAATCTTCAACATCTTGTTATCTTGGATCTTTCATTGAATAAATTAAGTGGCCAAATTCCATCCTCAATTTCTAATCTTCAATATCTCGTTTTCTTAGATCTTTCACATAATAGATTGGAGGGTCCTCTACCTAACAAAGTAAGAAGTCTTTCAAACCTAACTCGATTATACTTCAATGACAACTTACTAAATGAAACAATTCCTGTTTGGTGTTTATCTTTGCCATCTTTGCTAGAACTAGATCTATCAGATAATCAGTTCACAGGACATATAAGAGCTGTCAAGTCACATTCCTTTGAATTTCTGTATTTGTGCAACAACAAGCTACAGGGCAATATTCCACAATCAATCTTCACTCTCGTAAATCTTCGCCAATTATGTTTATCATCAAACAACTTTAGTGGTTTTCACAGCGTCAATTACAATTTCCCTAGCTTAGAGAGATTGTATTTATCTTCTTTAGGTCTGACAGAATTTCCAAAATTGGCTGGAAAAGTCCCAATGTTGACACAACTTGATCTATCCAACAACAAATTGAACGGAACAGTTCCCCAGTGGTTACATGAAATGGATTCATTATATTTTTTGAACCTATCCCAAAACTTGTTGACAACTCCAATCAAGCAATTCTCAAGGAACTACAACCTCCGCTTCCTTGATCTTAGTTTCAATTTACTCACTGGGCACATCTCTTCCTCCATTTGTAATGTAAGTTCACTTAATGTTCTCCTCTTGTCGCACAATAAGTTGGTAGGGCTCATTCCAACATGCCTTGCAAACTTGTATTCCCTTTCTATTTTGGATTTACAAAGGAACAAACTAAATGGCACATTACCAAGTAATTTCTCAATGAATGCTCCTCTCGGCGTTATAAATCTCAATGACAACCAATTAGAAGGTATTTTTCCAAAATCTTTGTCCAATTGCACGGAATTAGAGATCTTGAATCTTGCCAACAATCAAATTGAGGACAAATTTCCTGACTGGATTCAAACTCTACCAAGGTTGACAGTATTGGTATTGCGTGCCAACAAATTGTACGGTCCCATTCCAAGTTTAAAGATGAAACATGGATTTTCAAGTTTACTTACTTTTGATATCTCATCCAACTACTTCAATGGTTCAATACCAAAAAGCTATATACAAAATTTTCAAGCCATGAAGAACGTTATTCGTTATAAAGTGGGCGAGCTATACATGCAACCTTCCAATAGTAATGCATATGTAACTGAATCTGCAACTGTAACTGAATTTGCAACTGTAACAACAAAAGCCATAAATATGGCATTCAAAAAAATTCCAAAAAACTTTATAACCATTGATTTATCCCAAAACAAATTTGAAGGAGAGATTCCATATGTGATTGGAGAGCTTCATGCTCTTAGAGGACTCAACTTTTCCCATAATAGACTCAGTGGTTCCATTCCCCAATCCATTGGAAATTTGACAAATTTGGAATCATTGGATCTCTCCTCAAATATGTTCATCGGTAGGATACCCACAGAATTAACCAATTTGAACTTTCTTGAAGTCCTGAATCTTTCCTATAATCATCTTGTTGGAGAAATACCTGAAGGAAAACAGTTCAACACTTTTGAAAATAACTCCTATATTGGAAACTCAGGACTATGTGGGTTCCTATTGTCAAAGAACTGCAAGAACACTGAACAACAATCTCCATCTTCTACGAGCTTCTGGCGAGAAGAAAGATTTGAATTTGGATGGAAAGCAGTTGTTATAGGATATGGATGTGGAATAATATTTGGAATTGGCCTAGGAATTTTTGTATTGTTCATTGGAAAGCCTGAATGGCTTGTTAAAATGGTAGGAGGTGGTCTACGTAAAAAGATGAAAAGAAGGTGA 3096 0.3669 MESWVGWLLLLCCHMFFFHFSFSHSLCHPHDKIALLQFKTSNTFSFGSDETSLTYDDATYAACSDMDPKTATWKNETDCCSWVGVSCHPISGRVIGLDVSCSGLFGAIHSNNTLFHLSHLQSLNLASNFFFNFKLSTLFDGLVSLTRLNLSNSFLISEVPSQISQLSKLESLDLSHNFRLWWKESSWKKFLQNATFLKELILDDVDMALSSMRPLNQSTSLVSLSLSNTEVWGNLKNDILCLPKLQRLHFSYNYGLNGQHLPNFSCNGASLTILDLSSNQFEGSIPASFSNLTHLTFLDLSDNIYLKGSIPSSLLTFPSLTFLDLGFNKFSGQIPNVFPQSNSFEKLDLSHNNIEGELPSTLSNLQRLIFLDLSKNKFSGQIPSSISNLQRLIHLDLSHNEFKGQIPSSLSNLQHLVILDLSLNKLSGQIPSSISNLQYLVFLDLSHNRLEGPLPNKVRSLSNLTRLYFNDNLLNETIPVWCLSLPSLLELDLSDNQFTGHIRAVKSHSFEFLYLCNNKLQGNIPQSIFTLVNLRQLCLSSNNFSGFHSVNYNFPSLERLYLSSLGLTEFPKLAGKVPMLTQLDLSNNKLNGTVPQWLHEMDSLYFLNLSQNLLTTPIKQFSRNYNLRFLDLSFNLLTGHISSSICNVSSLNVLLLSHNKLVGLIPTCLANLYSLSILDLQRNKLNGTLPSNFSMNAPLGVINLNDNQLEGIFPKSLSNCTELEILNLANNQIEDKFPDWIQTLPRLTVLVLRANKLYGPIPSLKMKHGFSSLLTFDISSNYFNGSIPKSYIQNFQAMKNVIRYKVGELYMQPSNSNAYVTESATVTEFATVTTKAINMAFKKIPKNFITIDLSQNKFEGEIPYVIGELHALRGLNFSHNRLSGSIPQSIGNLTNLESLDLSSNMFIGRIPTELTNLNFLEVLNLSYNHLVGEIPEGKQFNTFENNSYIGNSGLCGFLLSKNCKNTEQQSPSSTSFWREERFEFGWKAVVIGYGCGIIFGIGLGIFVLFIGKPEWLVKMVGGGLRKKMKRR 1031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00365 1031 Gene3D Ribonuclease Inhibitor 25 255 IPR032675 -
Vimu1g00365 1031 Gene3D Ribonuclease Inhibitor 257 339 IPR032675 -
Vimu1g00365 1031 SUPERFAMILY L domain-like 623 948 - -
Vimu1g00365 1031 Gene3D Ribonuclease Inhibitor 551 971 IPR032675 -
Vimu1g00365 1031 PRINTS Leucine-rich repeat signature 580 593 - -
Vimu1g00365 1031 PRINTS Leucine-rich repeat signature 893 906 - -
Vimu1g00365 1031 SUPERFAMILY Outer arm dynein light chain 1 510 667 - -
Vimu1g00365 1031 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1-LIKE-RELATED 368 456 IPR046956 -
Vimu1g00365 1031 Gene3D Ribonuclease Inhibitor 340 427 IPR032675 -
Vimu1g00365 1031 FunFam Leucine-rich repeat receptor-like protein kinase TDR 191 460 - -
Vimu1g00365 1031 SUPERFAMILY L domain-like 71 258 - -
Vimu1g00365 1031 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 569 803 - -
Vimu1g00365 1031 SUPERFAMILY L domain-like 213 499 - -
Vimu1g00365 1031 Pfam Leucine rich repeat N-terminal domain 29 87 IPR013210 -
Vimu1g00365 1031 Gene3D Ribonuclease Inhibitor 428 550 IPR032675 -
Vimu1g00365 1031 SMART LRR_sd22_2 893 919 - -
Vimu1g00365 1031 SMART LRR_sd22_2 461 476 - -
Vimu1g00365 1031 SMART LRR_sd22_2 268 294 - -
Vimu1g00365 1031 SMART LRR_sd22_2 531 549 - -
Vimu1g00365 1031 SMART LRR_sd22_2 624 650 - -
Vimu1g00365 1031 SMART LRR_sd22_2 365 391 - -
Vimu1g00365 1031 SMART LRR_sd22_2 413 439 - -
Vimu1g00365 1031 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 841 963 - -
Vimu1g00365 1031 Pfam Leucine rich repeat 626 685 IPR001611 GO:0005515
Vimu1g00365 1031 Pfam Leucine rich repeat 555 614 IPR001611 GO:0005515
Vimu1g00365 1031 Pfam Leucine rich repeat 701 757 IPR001611 GO:0005515
Vimu1g00365 1031 Pfam Leucine rich repeat 270 330 IPR001611 GO:0005515
Vimu1g00365 1031 Pfam Leucine rich repeat 345 401 IPR001611 GO:0005515
Vimu1g00365 1031 Pfam Leucine rich repeat 850 905 IPR001611 GO:0005515
Vimu1g00365 1031 SMART LRR_typ_2 269 291 IPR003591 -
Vimu1g00365 1031 SMART LRR_typ_2 577 600 IPR003591 -
Vimu1g00365 1031 SMART LRR_typ_2 531 553 IPR003591 -
Vimu1g00365 1031 SMART LRR_typ_2 317 340 IPR003591 -
Vimu1g00365 1031 SMART LRR_typ_2 117 141 IPR003591 -
Vimu1g00365 1031 SMART LRR_typ_2 413 437 IPR003591 -
Vimu1g00365 1031 SMART LRR_typ_2 461 484 IPR003591 -
Vimu1g00365 1031 SMART LRR_typ_2 648 671 IPR003591 -
Vimu1g00365 1031 SMART LRR_typ_2 672 695 IPR003591 -
Vimu1g00365 1031 SMART LRR_typ_2 869 892 IPR003591 -
Vimu1g00365 1031 SMART LRR_typ_2 893 917 IPR003591 -
Vimu1g00365 1031 SMART LRR_typ_2 142 166 IPR003591 -
Vimu1g00365 1031 SMART LRR_typ_2 485 512 IPR003591 -
Vimu1g00365 1031 SMART LRR_typ_2 365 389 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00365 Vimu-Chr1 2170298 2173393 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00365 23 1015 Receptor kinase-like Gene Family AT2G15080 35.225 5.44e-142 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00365 - - vum:124820178 1507.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00365 1 2170298 2173393 Vimu1g00365 1 2170298 2173393 ECH