Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g2054 ATGAATATAGATGAAGGCAACATGACAAGAAAATATATGGGGGAAGAGTATTATCAAGATTCCATAGTGGTGACAATCAAAAGGTTAGAGATTGAATTTGTGAAAATCTTGAATACTTTCACAACAATTGATTTATCAAGCAATAAATTCCAAGGAGAGATTCCCAAGTCCATTGGAAATCTTAATTCACTTCGAGGGCTCAATTTGTCTCATAACAACCTTGCAGGACATATCCCATCATCTTTTGGGAATTTGAAGTTGCTTGAATCATTAGACCTCTCTTCAAACAAGCTCATTGGGAGAATTCCTCAAGAATTAACGAGTTTGACATTTCTCGAAGTTTTGAATCTTTCCCAAAACCATCTTACTGGATTTATACCTCAAGGTAATCAGAGTGGAGCCCAAACAATTTATGTATCCCATAACAAATTGAGTGGAGAAATCTCATCATTGATTTGCAAAGTGAGTTCCATGGGAATTCTTGATTTGTCTAATAACAACTTGAGTGGCATGCTTCCTCATTGTTTGGGGAATTTTAGCAAAGATCTTTCTGTTTTGAATTTACGAAGGAATCGATTTCATGGCATCATTCCTCAAACATTTTTAAAGGACAATGCTATCAGGAATCTTGACTTCAACGATAATCAATTGGAAGGCTCAGTACCTCGATCTTTGATCATTTGTAGAAAACTTGAAGTTCTAGACCTTGGGAATAATAAGATAAATGATACATTTCCCCATTGGTTGGGAACTCTTCCAGAGTTGCAAGTTCTTGTTTTGCGCTCTAATAGTTTCCATGGTCATATAGGGTGTTCCAAAATCAAATCCCCATTCATGAGCCTAAGAATCATTGATCTCGCTCACAATGATTTTGAGGGTGACTTGCCTGAAATGTATTTGAGAAGTTTGAAAGCAACAATGAATGTAGATGAACGCAACATGACAAGAAAATATATGGGGGACAGTTATTATCAAGATTCCGTAATGGTGACAATCAAGGGGTTGGAGATTGAATTTGTGAAAATCTTGAATACATTCACAACAATTGATTTATCAAGCAATAAATTCCAAGGAGAGATTCCAAAGTCCATTGGAAATCTTAATTCACTTCGAGGGCTCAATTTGTCTCATAACAACCTTGCAGGACATATCCCATCATCTTTTGGGAATTTGAAGTTGCTTGAATCATTAGACCTCTCTTCAAACAAGCTCATTGGGATAATTCCTCAAGAATTAACAAGTTTGACATTTCTTGAAGTTTTGAATCTTTCCCAAAACCATCTTACTGGATTTATACCTCGAGGTAATCAATTTGACACTTTTGGAAATGATTCATACAATGAGAACTCAGGGTTGTGTGGATTTCCATTGTCAAAGAAATGCATAATTGATGAAACACCAGAGTCTTCAAAGGAAACGGATGCAGAGTTTGATGGTGGATTTGATTGGAAAATCACATTGATGGGATATGGATGTGGATTGATAATTGGGTTATCTCTTGGGTGTCTCATTTTCTTAACTGGGAAACCTAAATGGTTGACAACGATGGTCGAAGAGAACATTCACAAGAAGATCACAAGGTCTAAAAAAGGGAAAGAACAATAA 1605 0.3607 MNIDEGNMTRKYMGEEYYQDSIVVTIKRLEIEFVKILNTFTTIDLSSNKFQGEIPKSIGNLNSLRGLNLSHNNLAGHIPSSFGNLKLLESLDLSSNKLIGRIPQELTSLTFLEVLNLSQNHLTGFIPQGNQSGAQTIYVSHNKLSGEISSLICKVSSMGILDLSNNNLSGMLPHCLGNFSKDLSVLNLRRNRFHGIIPQTFLKDNAIRNLDFNDNQLEGSVPRSLIICRKLEVLDLGNNKINDTFPHWLGTLPELQVLVLRSNSFHGHIGCSKIKSPFMSLRIIDLAHNDFEGDLPEMYLRSLKATMNVDERNMTRKYMGDSYYQDSVMVTIKGLEIEFVKILNTFTTIDLSSNKFQGEIPKSIGNLNSLRGLNLSHNNLAGHIPSSFGNLKLLESLDLSSNKLIGIIPQELTSLTFLEVLNLSQNHLTGFIPRGNQFDTFGNDSYNENSGLCGFPLSKKCIIDETPESSKETDAEFDGGFDWKITLMGYGCGLIIGLSLGCLIFLTGKPKWLTTMVEENIHKKITRSKKGKEQ* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g2054 534 FunFam Tyrosine-sulfated glycopeptide receptor 1 224 466 - -
Vvi18g2054 534 FunFam LRR receptor-like serine/threonine-protein kinase 36 106 - -
Vvi18g2054 534 Gene3D Ribonuclease Inhibitor 134 469 IPR032675 -
Vvi18g2054 534 SUPERFAMILY RNI-like 43 433 - -
Vvi18g2054 534 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 139 504 IPR045273 -
Vvi18g2054 534 SMART LRR_typ_2 61 84 IPR003591 -
Vvi18g2054 534 SMART LRR_typ_2 155 178 IPR003591 -
Vvi18g2054 534 SMART LRR_typ_2 109 132 IPR003591 -
Vvi18g2054 534 SMART LRR_typ_2 391 414 IPR003591 -
Vvi18g2054 534 SMART LRR_typ_2 415 438 IPR003591 -
Vvi18g2054 534 SMART LRR_typ_2 367 390 IPR003591 -
Vvi18g2054 534 SMART LRR_typ_2 228 252 IPR003591 -
Vvi18g2054 534 SMART LRR_typ_2 85 108 IPR003591 -
Vvi18g2054 534 PRINTS Leucine-rich repeat signature 394 407 - -
Vvi18g2054 534 PRINTS Leucine-rich repeat signature 415 428 - -
Vvi18g2054 534 Gene3D Ribonuclease Inhibitor 7 133 IPR032675 -
Vvi18g2054 534 FunFam Leucine-rich repeat receptor protein kinase EMS1 107 200 - -
Vvi18g2054 534 Pfam Leucine rich repeat 373 428 IPR001611 GO:0005515
Vvi18g2054 534 Pfam Leucine rich repeat 41 98 IPR001611 GO:0005515
Vvi18g2054 534 Pfam Leucine Rich repeat 228 243 IPR001611 GO:0005515
Vvi18g2054 534 Pfam Leucine Rich Repeat 112 128 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g2054 Vvi-Chr18 28482879 28494713 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g2054 37 520 Receptor kinase-like Gene Family AT3G28890 44.919 4.93e-122 373
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g2054 - - vvi:100256900 723.391