Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g2047 ATGGCGCCTATATGCACAAGTGGTTGGAGGTTCTTTGCAAATTTGTCCAATGGATATGCTGCAGAAGATATTAAACATTCATCTCAAGCTTTTGTCATGTACAGGCTGCTTTCTCCTGCATCTAATCCGCATGAACCTCGCTGCTGCAATATATCCCATTTTAAAACCTCAGCCAAAAACCCCTCTCTATGCCTCTCCATAGCCAAACTCTTAATCCCAATACTAAGCCCTAAGCAAATGACTATACTAAAGATCAGGATTATTTTACAATTTTTTGGTGATAGTTTAAGAGGGTTGAGAGTATGTAAAAATGATGTAGTTGTGGCTGGTGGCATGGAAAGTATGTCTAATGCGCCTAAATACCTAGTAGATGCAACTGATGGTGCGGCTGCATTAGTGCTAGTGACTGGTAAGAAGGCAGTTGAGCTTAGAGTCCAAGTGATTGCTAAGATTGCAGGATATGGTGATGCTGCTCAGGCACCTGAGTTGTTTACAACTACCCCAGCCCTTGCAATTCCAAAAGCTATTTCTAATGCTGGCCTGAAGGCTTCTCAAATTGATTACTATGAAATAAACAAGGCTTTCGCCGAAAAGGTCAATGTTCATGGTGGATCTATATCTTTGGGACATCCAATAGGTTGCAGTGGTGCTCGTATCTTGGTCACATTTTTATCTTGGAGAAGCTGCATCTATCAGTTGCAATTTGCTCTTACAGGAGGAGCAAGTTACAGGGCGGAATATGAGGGAAATTTGAAGGAAATCCTTGGTTACACTAAGGATGATGTGGTATCAAGTGACTTTATCGGGGACCGCAGGTCGAGTATTTTTTATGCCAAGGCTGGAATTGCTCTGAATGACAACTTTATCAAGTTGGTCTCTTGGTATGATAATGAATGGGTTTACAGTTGGTTAAGAAGAGGATGGAACAGTCCAGTGATAATAGTTGGAGCAGAAGATAAGGAGTACCAATTGACTATAGAGGACATTGATTTGAGTTTTGTGTTCATGTACATTCTGTAA 1020 0.4108 MAPICTSGWRFFANLSNGYAAEDIKHSSQAFVMYRLLSPASNPHEPRCCNISHFKTSAKNPSLCLSIAKLLIPILSPKQMTILKIRIILQFFGDSLRGLRVCKNDVVVAGGMESMSNAPKYLVDATDGAAALVLVTGKKAVELRVQVIAKIAGYGDAAQAPELFTTTPALAIPKAISNAGLKASQIDYYEINKAFAEKVNVHGGSISLGHPIGCSGARILVTFLSWRSCIYQLQFALTGGASYRAEYEGNLKEILGYTKDDVVSSDFIGDRRSSIFYAKAGIALNDNFIKLVSWYDNEWVYSWLRRGWNSPVIIVGAEDKEYQLTIEDIDLSFVFMYIL* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g2047 339 SUPERFAMILY Thiolase-like 145 224 IPR016039 GO:0016746
Vvi18g2047 339 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 243 295 - -
Vvi18g2047 339 Gene3D Dihydrodipicolinate Reductase; domain 2 238 297 - -
Vvi18g2047 339 Pfam Thiolase, C-terminal domain 146 224 IPR020617 GO:0016747
Vvi18g2047 339 ProSitePatterns Thiolases signature 2. 200 216 IPR020613 GO:0016747
Vvi18g2047 339 PANTHER ACETYL-COA C-ACYLTRANSFERASE 10 124 - -
Vvi18g2047 339 Gene3D - 122 227 IPR016039 GO:0016746
Vvi18g2047 339 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 245 295 IPR020829 GO:0016620
Vvi18g2047 339 FunFam Glyceraldehyde-3-phosphate dehydrogenase GAPCP1 chloroplastic 238 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g2047 Vvi-Chr18 28414670 28423190 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g2047 126 224 Acyl Lipid Metabolism Gene Families AT5G48880 37.168 1.48e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g2047 K00626 - vvi:100855181 176.022