Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi17g0173 . . . . Adu05g02808 . . . . . . . . . . . . . . Apr2g1600 Arst5g03561 . . . . . . . . . . Cca09g02848 . . . . . . . . . . . . . . . . . Lal16g0924 . . . . . . . . . . . . . . . . . . . . . . Lja2g2232 . . Mal6g3346 . . . . . . . Mtr6g1864 . . . . Prci14g1781 . . . . . . . . . . . Pvu4g1580 . . . . . . . . Ssu5g3519 . . . . . . . Tsu06g03670 . . . . . . . . . . . .
Vvi17g0174 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Gma05g02399 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g0175 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mtr6g2025 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g0176 . . . . . . . . Aev05g3523 . . . Aip05g02859 . . . . . Apr6g0982 . . . . . . . . . . . . . . . Dod02g3748 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto8g4484 . . . . . . . . . . . . . . . . . .
Vvi17g0177 . . . . . . Aed7g0294 Aed5g2661 . . . . . . . . . . Apr6g0981 Apr2g1256 . . . . . . . . . Car06g00144 Cca08g00315 Cca09g02843 . . . . . . . . . Gma08g00534 Gma05g02395 . . . . . Lal15g0907 . Lal23g0706 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mtr8g3898 . . . . . . . . . . . . . . . . . . . . . . . . . Ssu5g3514 Ssu5g3514 . . . . . . . . . . . . . . . . . . Vra1g0691 .
Vvi17g0178 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lal25g0487 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Psa1g0676 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g0179 . . . . . . . . . . . . . . . . . . Apr6g0980 . . . . . . . . . Car08g01608 . . . . . . . . . . . Gma07g00931 . . . Gso7g0879 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g0180 . . . . . . . . . . . . . . . . . . Apr6g0977 . . . . . . . Bva04g00903 . . . . . . . . . . . . . . . . Gma09g01624 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja2g2220 . . Mal6g3339 . . . . . . . Mtr6g1855 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tsu06g03684 . . . . . . . . . . . .
Vvi17g0181 . . . . . . . . . . . . . . . . . . Apr6g0976 Apr2g1597 . Arst5g03574 . Bach1g01426 . . . . . . . . . . . . . . . . . . . . . . . . . Lal16g0926 . Lal8g0470 . . . . . . . . . . . Lasa7g05317 . . . . . . . . . . . . . . . . . . . . . Phac2g04951 . Phco4g03746 . . Psa1g0683 Psa7g0021 . . . . . . . . . Pvu2g3412 . . . . . . . . . . . . . . . . . . . . . . . . . Vivi5g06460 . .
Vvi17g0182 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Apr Apr2g1256 Chr2 18815486 18819327 +
Ssu Ssu5g3519 Chr5 86195589 86196527 -
Vvi Vvi17g0173 Chr17 1537423 1538367 +
Adu Adu05g02808 Chr05 96004541 96015312 +
Apr Apr2g1600 Chr2 21751590 21752930 -
Arst Arst5g03561 Chr5 94662618 94673392 +
Cca Cca09g02848 Chr09 54083395 54084505 -
Lal Lal16g0924 Chr16 6125720 6126676 +
Lja Lja2g2232 Chr2 25692182 25693458 -
Mal Mal6g3346 Chr6 97560778 97561758 -
Mtr Mtr6g1864 Chr6 33859888 33861218 -
Prci Prci14g1781 Chr14 25249143 25262730 +
Pvu Pvu4g1580 Chr4 43012538 43026537 -
Ssu Ssu5g3519 Chr5 86195589 86196527 -
Tsu Tsu06g03670 Chr06 48550736 48552341 +
Vvi Vvi17g0174 Chr17 1553776 1569449 +
Gma Gma05g02399 Chr05 44768031 44773503 +
Vvi Vvi17g0175 Chr17 1574095 1575393 -
Mtr Mtr6g2025 Chr6 36701192 36703390 -
Vvi Vvi17g0176 Chr17 1582434 1627116 +
Aev Aev05g3523 Chr05 34430585 34439307 +
Aip Aip05g02859 Chr05 129914120 129920841 -
Apr Apr6g0982 Chr6 14428360 14440767 -
Dod Dod02g3748 Chr02 76468601 76479867 +
Sto Sto8g4484 Chr8 47577224 47590643 -
Vvi Vvi17g0177 Chr17 1631169 1633796 -
Aed Aed7g0294 Chr7 2118961 2121459 -
Aed Aed5g2661 Chr5 27155290 27158412 -
Apr Apr6g0981 Chr6 14414152 14416954 +
Apr Apr2g1256 Chr2 18815486 18819327 +
Car Car06g00144 Chr06 1753651 1756824 +
Cca Cca08g00315 Chr08 4646710 4650103 -
Cca Cca09g02843 Chr09 54017902 54021192 -
Gma Gma08g00534 Chr08 4371761 4374541 -
Gma Gma05g02395 Chr05 44747677 44749986 -
Lal Lal15g0907 Chr15 6874526 6878054 +
Lal Lal23g0706 Chr23 9720184 9723345 -
Mtr Mtr8g3898 Chr8 49576632 49579810 -
Ssu Ssu5g3514 Chr5 86096952 86099323 -
Ssu Ssu5g3514 Chr5 86096952 86099323 -
Vra Vra1g0691 Chr1 8127512 8130668 -
Vvi Vvi17g0178 Chr17 1643348 1643743 +
Lal Lal25g0487 Chr25 3401202 3403577 +
Psa Psa1g0676 Chr1 43640104 43642578 -
Vvi Vvi17g0179 Chr17 1644955 1656845 -
Apr Apr6g0980 Chr6 14400678 14407076 +
Car Car08g01608 Chr08 25599687 25608234 +
Gma Gma07g00931 Chr07 10261696 10268027 -
Gso Gso7g0879 Chr7 10034365 10040803 -
Vvi Vvi17g0180 Chr17 1659576 1663720 -
Apr Apr6g0977 Chr6 14376288 14379653 +
Bva Bva04g00903 Chr04 5956258 5958511 -
Gma Gma09g01624 Chr09 41586655 41593256 +
Lja Lja2g2220 Chr2 25427595 25430831 -
Mal Mal6g3339 Chr6 96720546 96734094 -
Mtr Mtr6g1855 Chr6 33676481 33691281 -
Tsu Tsu06g03684 Chr06 48837548 48842264 +
Vvi Vvi17g0181 Chr17 1666578 1668037 -
Apr Apr6g0976 Chr6 14360860 14362495 +
Apr Apr2g1597 Chr2 21731983 21733544 -
Arst Arst5g03574 Chr5 94839840 94841498 -
Bach Bach1g01426 Chr1 27730006 27731300 +
Lal Lal16g0926 Chr16 6134968 6136711 +
Lal Lal8g0470 Chr8 3139431 3141047 +
Lasa Lasa7g05317 Chr7 722472738 722473707 -
Phac Phac2g04951 Chr2 45563858 45565606 -
Phco Phco4g03746 Chr4 56837706 56838754 -
Psa Psa1g0683 Chr1 44190724 44193873 -
Psa Psa7g0021 Chr7 635804 637466 +
Pvu Pvu2g3412 Chr2 48897009 48898331 -
Vivi Vivi5g06460 Chr5 171263567 171265117 +
Vvi Vvi17g0182 Chr17 1679893 1685394 +