Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi17g0163 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g0164 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g0165 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g0166 . . . . Adu05g02832 . . . Aev05g3530 . Ahy15g2532 . Aip05g02815 . . . Amo15g1744 . . . Arst5g03581 . Bach1g01424 . . . . . . . . . . . Dod02g2711 . . . . . . . . . . . . . . . . . . . . . . . . . Lapu4g00277 . Lasa1g04188 . . . . . . . . . . . . . Mepo7g00892 . Mesa22g02772 . . . . . . . Phco5g00355 . . . . . Pste9g01413 . . Pte9g00158 . . Pumo6g02921 . Pvu4g1571 . Rops5g00391 . Seca10g04697 . Spst4g02852 . . . . . . . . . . . Vian8g01383 . Vifa1g07450 . Vimu8g01666 . Viun4g00417 . Vivi4g00423 . . .
Vvi17g0167 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g0168 . . . . . . Aed7g0303 . . . . . . . . . . . Apr6g0974 . . . . . . . . . . . Cca08g00325 . . . . . . . . . . . . . . . . . . . Lal23g0707 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Ssu5g3517 . . Sto8g4465 . . . . . . . . . . . . . . . . . .
Vvi17g0169 . . . . . Adu03g04066 . . . . . . . . . . . . . Apr2g1247 . Arst5g01911 . Bach1g01422 . . . . . Car06g00140 . . . . . . . . . . . Gma08g00537 . . . . . . . . . . . . . . . . . . . Lapu3g03968 . Lasa7g05319 . . . . . . . . . Lja4g0003 . . . . . Mesa13g00009 . . Mtr8g3899 . . Phac2g04954 . Phco4g03748 . . . Psa7g0019 . . . . . . . Pumo6g00037 . Pvu2g3414 . . . Seca12g07013 . Spst3g00639 . . . . . . . Trre7g05996 . . . Vian1g04231 . Vifa6g04196 . Vimu11g04951 . . . Vivi5g06458 . .
Vvi17g0170 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g0171 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva04g00913 . Car08g01600 . . . . . . . . . . . Gma07g00951 . . Gma09g01616 Gso7g0893 . . Gso7g0893 . . . Lal8g0467 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g0172 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Apr Apr2g1247 Chr2 18715592 18724520 -
Vvi Vvi17g0163 Chr17 1469383 1469937 -
Vvi Vvi17g0164 Chr17 1475025 1475958 +
Vvi Vvi17g0165 Chr17 1479529 1487087 -
Vvi Vvi17g0166 Chr17 1488104 1491277 -
Adu Adu05g02832 Chr05 96400096 96404626 -
Aev Aev05g3530 Chr05 34495823 34500151 -
Ahy Ahy15g2532 Chr15 139769936 139774721 +
Aip Aip05g02815 Chr05 129014654 129019382 +
Amo Amo15g1744 Chr15 117697848 117702619 +
Arst Arst5g03581 Chr5 95057977 95062833 -
Bach Bach1g01424 Chr1 27708520 27711447 +
Dod Dod02g2711 Chr02 59264253 59270242 +
Lapu Lapu4g00277 Chr4 2822280 2826461 -
Lasa Lasa1g04188 Chr1 713722435 713725125 -
Mepo Mepo7g00892 Chr7 13959008 13964165 +
Mesa Mesa22g02772 Chr22 73619700 73624231 -
Phco Phco5g00355 Chr5 3102532 3105729 -
Pste Pste9g01413 Chr9 13444336 13449055 +
Pte Pte9g00158 Chr9 1757639 1760835 -
Pumo Pumo6g02921 Chr6 69509183 69513562 +
Pvu Pvu4g1571 Chr4 42890584 42894273 +
Rops Rops5g00391 Chr5 6684196 6688059 -
Seca Seca10g04697 Chr10 107896470 107900403 +
Spst Spst4g02852 Chr4 68229110 68231938 -
Vian Vian8g01383 Chr8 32985135 32989520 +
Vifa Vifa1g07450 Chr1 1152362879 1152365611 -
Vimu Vimu8g01666 Chr8 22517153 22521243 -
Viun Viun4g00417 Chr4 2828999 2832268 -
Vivi Vivi4g00423 Chr4 9221738 9225145 -
Vvi Vvi17g0167 Chr17 1493271 1493510 -
Vvi Vvi17g0168 Chr17 1498508 1501792 +
Aed Aed7g0303 Chr7 2184505 2188014 +
Apr Apr6g0974 Chr6 14320606 14324562 -
Cca Cca08g00325 Chr08 4768442 4774164 +
Lal Lal23g0707 Chr23 9728381 9733931 +
Ssu Ssu5g3517 Chr5 86168464 86171643 +
Sto Sto8g4465 Chr8 47380292 47384286 -
Vvi Vvi17g0169 Chr17 1503066 1509601 +
Adu Adu03g04066 Chr03 129742429 129758842 +
Apr Apr2g1247 Chr2 18715592 18724520 -
Arst Arst5g01911 Chr5 24752853 24757853 +
Bach Bach1g01422 Chr1 27693616 27697253 -
Car Car06g00140 Chr06 1719699 1723119 -
Gma Gma08g00537 Chr08 4397835 4401722 +
Lapu Lapu3g03968 Chr3 63063473 63067874 +
Lasa Lasa7g05319 Chr7 722499602 722502608 +
Lja Lja4g0003 Chr4 24229 28693 -
Mesa Mesa13g00009 Chr13 111182 115108 -
Mtr Mtr8g3899 Chr8 49592545 49597071 +
Phac Phac2g04954 Chr2 45573314 45580153 +
Phco Phco4g03748 Chr4 56846280 56850819 +
Psa Psa7g0019 Chr7 613104 615975 -
Pumo Pumo6g00037 Chr6 413316 417195 -
Pvu Pvu2g3414 Chr2 48905938 48910773 +
Seca Seca12g07013 Chr12 162056653 162058609 +
Spst Spst3g00639 Chr3 9920225 9923995 -
Trre Trre7g05996 Chr7 64191138 64195009 +
Vian Vian1g04231 Chr1 65197458 65201391 +
Vifa Vifa6g04196 Chr6 1378370565 1378373626 +
Vimu Vimu11g04951 Chr11 68897963 68902200 +
Vivi Vivi5g06458 Chr5 171244018 171247701 -
Vvi Vvi17g0170 Chr17 1512892 1517370 +
Vvi Vvi17g0171 Chr17 1519428 1526279 -
Bva Bva04g00913 Chr04 5990452 5993432 -
Car Car08g01600 Chr08 25492724 25497413 +
Gma Gma07g00951 Chr07 10518742 10522103 -
Gma Gma09g01616 Chr09 41481593 41485346 +
Gso Gso7g0893 Chr7 10291951 10295394 -
Gso Gso7g0893 Chr7 10291951 10295394 -
Lal Lal8g0467 Chr8 3119191 3124089 +
Vvi Vvi17g0172 Chr17 1529100 1531286 +