Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0175 ATGATAGCATCAAAGCCTAGATATCATCACCGCTCATCTCTTGTAAAGCAAGTACTAGCTGCAATGGTCCAGAACTGCCCATTGGATGCCTCACCCAACAAGAGTTGCAACCAGCCATGGACAACTGACTCTGTTTCCGAGGTACTCCGATCCATACCCAGACTCTTCTTCCAGTCACCCCGATCCATTGGCCGCCAAAAAGGCTTCCGCCATCGCTCACCTCTCAAGCAAAGAAACCTTTATCAAGAACCCAATAAATTTCACAGATATAGGGACCCCCACAAGGTGAAATTAGGAGTGGAGAAGGCAATGGAGTTCTACAGTTGGGTCGAGACCCAGTTCGGGTTTTCCCACAATGAGATGACATGTAGAGAGATGGGTTGTGTTTTGGCTAGAGGGAATAGATTGAAGGTGCTTTGGGAGTTTCTCCATGAAATGGCAAGAAAAGGGGGAAATGGGGTTGTGACTACTGCAACCATTACCTGTTTGATGAAAGTTCTGGGAGAAGAGGGGCTGGCTAATCAGGCATTGGCTGCATTCTATAGGATGAAACAGTTCCACTGTAAACCGGATGTCTATGCATATAATACGATTATTTATGCGCTTTGTAGAGTTGGAAACTTTAGGAAGGCAAGGTTTTTGTTAGAGCAAATGGAGCTACCGGGCTTTAGATGCCCGCCCGATTCGTTCACCTACACTATCTTGATTGGTTCTTATTGTAAGTATAGTCTGCAAACTGGGTGCAGGAAGGCAGTTAGGAGGAGGTTGTGGGAGGCAAATCATTTATTTCGTATTATGCTGTTTAAGGGTTTTGTTCCTGATGTTGTGACTTATAACTGTTTGATTGATGGTTGTTGCAAAACTTATCGAATTGAGAGGGCATTGGAGCTGTTTGATGATATGAATAAAAGGGGCTGTGTCCCGAATCGGGTGACTTACAATTCTTTTATCAGGTACTATAGTGCAGTTAACGAGATTGATAAAGCTGTTGATATGTTGTGCAAGATGAAAGAGATGAATCATGGGATACCCACTACAAGCTCTTATACTCCAATTATCCATGCTCTTTGTGAAACAGGAAGGATACTAGAGGCCAGGGATTTTCTTATTGAGTTGGTTGATGGGGGCTCAGTTCCCAGGGAGTACACTTATAAAGTAGTTTGTGATTCTCTGAGATCAGCAGGAGAGGCTAACATGCTAGGCGATGAGTTGCGTGGAAGAATTGAAAATGGCATAGAGAATAGATACAAGCAAGTAATGAAGGTGAAACTAATTATGACACACAGAATTTCCTTATAG 1299 0.4334 MIASKPRYHHRSSLVKQVLAAMVQNCPLDASPNKSCNQPWTTDSVSEVLRSIPRLFFQSPRSIGRQKGFRHRSPLKQRNLYQEPNKFHRYRDPHKVKLGVEKAMEFYSWVETQFGFSHNEMTCREMGCVLARGNRLKVLWEFLHEMARKGGNGVVTTATITCLMKVLGEEGLANQALAAFYRMKQFHCKPDVYAYNTIIYALCRVGNFRKARFLLEQMELPGFRCPPDSFTYTILIGSYCKYSLQTGCRKAVRRRLWEANHLFRIMLFKGFVPDVVTYNCLIDGCCKTYRIERALELFDDMNKRGCVPNRVTYNSFIRYYSAVNEIDKAVDMLCKMKEMNHGIPTTSSYTPIIHALCETGRILEARDFLIELVDGGSVPREYTYKVVCDSLRSAGEANMLGDELRGRIENGIENRYKQVMKVKLIMTHRISL* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0175 432 Pfam PPR repeat family 190 241 IPR002885 -
Vvi17g0175 432 Pfam PPR repeat family 273 317 IPR002885 -
Vvi17g0175 432 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 309 343 IPR002885 -
Vvi17g0175 432 Pfam PPR repeat 348 375 IPR002885 -
Vvi17g0175 432 Pfam PPR repeat 161 187 IPR002885 -
Vvi17g0175 432 Gene3D Tetratricopeptide repeat domain 324 405 IPR011990 GO:0005515
Vvi17g0175 432 Gene3D Tetratricopeptide repeat domain 94 221 IPR011990 GO:0005515
Vvi17g0175 432 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 308 IPR002885 -
Vvi17g0175 432 NCBIfam pentatricopeptide repeat 276 309 IPR002885 -
Vvi17g0175 432 NCBIfam pentatricopeptide repeat 311 341 IPR002885 -
Vvi17g0175 432 NCBIfam pentatricopeptide repeat 193 219 IPR002885 -
Vvi17g0175 432 NCBIfam pentatricopeptide repeat 159 192 IPR002885 -
Vvi17g0175 432 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 131 241 - -
Vvi17g0175 432 Gene3D Tetratricopeptide repeat domain 225 323 IPR011990 GO:0005515
Vvi17g0175 432 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 345 379 IPR002885 -
Vvi17g0175 432 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 191 225 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0175 132 413 Glycosyltransferase AT1G05670 29.225 5.25e-26 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0175 - - vvi:100261059 894.034