Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0926 ATGGGTCTCTTCTTTTCTAGGAATTTGCCTTTTAAATTTTGCCTTTCTTTCATTTTCTCTAACAAAATTTCTGGGGAATTTTTCCCCAGACAACTTGAGAGAATGATGTGCTTGGTGGCACGCACTGGAAGACATTTACAACGTTATGATGGTGAGTGTCGCCAAGTTGTGGGATGCATTCCATATAGATATAGGCTGAAGGGAAACCAAAACAAGGAATTAGAAGTTCTTGTCATTAGTGCTCAAAAGGGTAGTGGAATGCAGTTCCCTAAGGGAGGTTGGGAGAGTGATGAGTCCATGGAACAAGCTGCTTTAAGAGAAACCATAGAGGAAGCTGGGGTTGTTGGCAGTATTGAAAGTAAATTGGGCAAATGGTTGTATAAGAGCAAACGCCAAGACAGGTTGCATGAGGGATATATGTTCTCTTTGCTTGTCAAGAAGCAATTAGAGAACTGGCCAGAGAAGAACATCCGAAATCGAAGATGGATGACTGTTGCTGAAGCAAAAGAAGTTTGTCCACATACTTGGATGAAGGAGGCTTTAGATGTATTGGTTAGTAGACAACCTCAAATCTAG 576 0.4132 MGLFFSRNLPFKFCLSFIFSNKISGEFFPRQLERMMCLVARTGRHLQRYDGECRQVVGCIPYRYRLKGNQNKELEVLVISAQKGSGMQFPKGGWESDESMEQAALRETIEEAGVVGSIESKLGKWLYKSKRQDRLHEGYMFSLLVKKQLENWPEKNIRNRRWMTVAEAKEVCPHTWMKEALDVLVSRQPQI 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0926 191 ProSiteProfiles Nudix hydrolase domain profile. 52 185 IPR000086 -
Lal16g0926 191 ProSitePatterns Nudix box signature. 92 113 IPR020084 GO:0016787
Lal16g0926 191 PANTHER NUDIX HYDROLASE-LIKE PROTEIN 23 191 - -
Lal16g0926 191 Pfam NUDIX domain 72 170 IPR000086 -
Lal16g0926 191 PANTHER DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE 23 191 - -
Lal16g0926 191 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 39 187 - -
Lal16g0926 191 CDD Nudix_Hydrolase_9 55 178 - -
Lal16g0926 191 SUPERFAMILY Nudix 53 188 IPR015797 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0926 Lal-Chr16 6134968 6136711 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0926 K07766 - gmx:100800531 331.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0926 16 6134968 6136711 Lal16g0926 16 6134968 6136711 ECH
Lal16g0926 16 6134968 6136711 Lal15g0905 15 6861743 6863661 LSH
Lal16g0926 16 6134968 6136711 Lal10g0951 10 16843794 16845687 PCT
Lal10g0951 10 16843794 16845687 Lal16g0926 16 6134968 6136711 PCT