Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g2025 ATGATTCGGTTTGTTCCTTTCTCAGTTTCTCATTTTCAATTTCCAAACCCTAAATTCATCATTTCAACAAGTTTATACTCTCAATTACATCATCATCACCAAGATGATGAACACAGTCTCGTTTCCTCCTTCAATCGCATCCTGAACATCAACCCTACACCCCCCATCTTTGAATTTGGAAAGATTTTAGGTTCTCTTGTTAAGATTAATTGTTACCAAACTGCTATTTCACTTCATCGAGAAATGGAATTCAACGGAATTGCTTCAGACTTGGTCACTTTCAACATCCTCATCAATTGTTTTTCTCAATTGGGTCATACCCATTTTTCTTTTTCTGTATTTGCCAACATTCTCAAAAAGGGTTATGAACCAAATGCCATAACTTTAACCACACTCATTAAGGGTCTGTGTCTCAAAGGTCAGATTCATCAAGCCTTGCACTTTCATGATAAGGTGGTTGCGCTTGGATTTCATTTAAACAAAGTTTGTTATGGGACTTTGATCAATGGGTTATGTAAAGTTGGACAAACAAGTGCAGCTTTGCAATTGCTGAGACGAGTTGATGGTAAATTGGTTCAACCTAATGTGGTAATGTACAACACCATTATTGATAGCATGTGCAAAGTTAAACTTGTTAATGAAGCTTTTGATTTATATTCTGAAATGGTTTCTAAGGGGATTTCTCCCGATGTTGTTACTTACAGTGCTTTAATTAGTGGTTTTTGCATTCTTGGTAAATTGAATGATGCAATTGGTTTGTTCAATAAAATGATATCGGAAGAAATCAACCCTGATGTGTATACCTTTAGTATATTGGTTGATGGATTTTGTAAGGAAGGAAGGGTGAAAGAAGCTAAAAATGTGTTAGCTATGATGATGAAACAAGGCATTAAACCTGATGTTGTTACTTATTGCTCTTTAATGGATGGATATTGCCTAGTTAAACAAGTGAATAAGGCTAAGAGTATATTCAACACTATGGCTCAGGGGGGAGTGACTGCTAATGTTCAGAGCTACAATATCATGATTAACGGGTTTTGTAAGATTAAAAAGGTTGATGAAGCCATGAATCTCTTTAAAGAAATGCATTGCAAAAACATTATTCCTGATGTGGTAACTTACAATTCCCTTATTGATGGTTTGTGTAAATCAGGGAAAATCTCTTATGCTTTGAAGCTAGTCGATGAGATGCATGATAGAGGTGTACCACATGATAAAATTACTTACAATTCTATATTGGATGCTTTATGCAAAAACCATCAGGTTGACAAGGCAATTGCGTTGTTAACGAAGATGAAAGATGAAGGAATTCAACCAGATATGTACACATACACTATTCTTATTGATGGATTGTGTAAAGGTGGAAGACTAAAGGATGCACAGAATATTTTTGAGGATCTTTTAGTCAAGGGCTATAATATAACTGTCTATACATATACCGTTATGATTCAAGGGTTTTGTGACAACGACTTGTTTGACAAAGCATTGGCCTTGCTGTCAAAAATGGAAGACAATGGCTGCATTCCAAATGCTAAAACTTATGAAATAATTATCCTTTCTCTGTTCGAAAAAGATGAAAATGATATGGCAGAGAAACTTCTTCGTGAAATGATCGCGCGAGGTCTATTGTAA 1632 0.3536 MIRFVPFSVSHFQFPNPKFIISTSLYSQLHHHHQDDEHSLVSSFNRILNINPTPPIFEFGKILGSLVKINCYQTAISLHREMEFNGIASDLVTFNILINCFSQLGHTHFSFSVFANILKKGYEPNAITLTTLIKGLCLKGQIHQALHFHDKVVALGFHLNKVCYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKGYNITVYTYTVMIQGFCDNDLFDKALALLSKMEDNGCIPNAKTYEIIILSLFEKDENDMAEKLLREMIARGLL* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g2025 543 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 230 264 IPR002885 -
Mtr6g2025 543 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 125 159 IPR002885 -
Mtr6g2025 543 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 90 124 IPR002885 -
Mtr6g2025 543 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 370 404 IPR002885 -
Mtr6g2025 543 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 475 509 IPR002885 -
Mtr6g2025 543 TIGRFAM PPR: pentatricopeptide repeat domain 162 186 IPR002885 -
Mtr6g2025 543 TIGRFAM PPR: pentatricopeptide repeat domain 477 511 IPR002885 -
Mtr6g2025 543 TIGRFAM PPR: pentatricopeptide repeat domain 197 231 IPR002885 -
Mtr6g2025 543 TIGRFAM PPR: pentatricopeptide repeat domain 232 266 IPR002885 -
Mtr6g2025 543 TIGRFAM PPR: pentatricopeptide repeat domain 267 301 IPR002885 -
Mtr6g2025 543 TIGRFAM PPR: pentatricopeptide repeat domain 92 126 IPR002885 -
Mtr6g2025 543 TIGRFAM PPR: pentatricopeptide repeat domain 407 440 IPR002885 -
Mtr6g2025 543 TIGRFAM PPR: pentatricopeptide repeat domain 338 371 IPR002885 -
Mtr6g2025 543 TIGRFAM PPR: pentatricopeptide repeat domain 302 335 IPR002885 -
Mtr6g2025 543 TIGRFAM PPR: pentatricopeptide repeat domain 442 473 IPR002885 -
Mtr6g2025 543 TIGRFAM PPR: pentatricopeptide repeat domain 372 404 IPR002885 -
Mtr6g2025 543 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 405 439 IPR002885 -
Mtr6g2025 543 Pfam PPR repeat family 476 519 IPR002885 -
Mtr6g2025 543 Pfam PPR repeat family 90 137 IPR002885 -
Mtr6g2025 543 Pfam PPR repeat family 194 242 IPR002885 -
Mtr6g2025 543 Pfam PPR repeat family 405 453 IPR002885 -
Mtr6g2025 543 Pfam PPR repeat family 335 383 IPR002885 -
Mtr6g2025 543 SUPERFAMILY HCP-like 125 335 - -
Mtr6g2025 543 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 265 299 IPR002885 -
Mtr6g2025 543 Gene3D Tetratricopeptide repeat domain 34 188 IPR011990 GO:0005515
Mtr6g2025 543 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 195 229 IPR002885 -
Mtr6g2025 543 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 324 542 - -
Mtr6g2025 543 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 41 406 - -
Mtr6g2025 543 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 179 471 - -
Mtr6g2025 543 PANTHER OS06G0565000 PROTEIN 179 471 - -
Mtr6g2025 543 PANTHER OS06G0565000 PROTEIN 324 542 - -
Mtr6g2025 543 PANTHER OS06G0565000 PROTEIN 41 406 - -
Mtr6g2025 543 Pfam PPR repeat 262 292 IPR002885 -
Mtr6g2025 543 Pfam PPR repeat 296 327 IPR002885 -
Mtr6g2025 543 Pfam PPR repeat 156 185 IPR002885 -
Mtr6g2025 543 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 440 474 IPR002885 -
Mtr6g2025 543 Gene3D Tetratricopeptide repeat domain 399 468 IPR011990 GO:0005515
Mtr6g2025 543 Gene3D Tetratricopeptide repeat domain 329 398 IPR011990 GO:0005515
Mtr6g2025 543 Gene3D Tetratricopeptide repeat domain 469 539 IPR011990 GO:0005515
Mtr6g2025 543 Gene3D Tetratricopeptide repeat domain 189 258 IPR011990 GO:0005515
Mtr6g2025 543 Gene3D Tetratricopeptide repeat domain 259 328 IPR011990 GO:0005515
Mtr6g2025 543 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 160 194 IPR002885 -
Mtr6g2025 543 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 510 543 IPR002885 -
Mtr6g2025 543 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 300 334 IPR002885 -
Mtr6g2025 543 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 335 369 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g2025 Mtr-Chr6 36701192 36703390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g2025 70 542 Glycosyltransferase AT1G05670 31.579 4.07e-85 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g2025 - - mtr:MTR_6g079890 762.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g2025 6 36701192 36703390 Mtr6g2025 6 36701192 36703390 ECH