Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06460 ATGGGTATTTTATTTTCTAGAAATCTTGCTATTAAATGTTTCTTGCCATTTCTTTTCTCCAACAGAGTTTCTGGGAACTTATTTCCCAAGGAACTCCAGAATATGATGTGTATGGTATCCCGTACTGGTAGAGATTTACAACGCTATGATGTTGATGGTTGTCGCCAAATCGTCGGATGCATTCCATATAGATATAGGAGAAAAGAAGAACATGAGAAAGAATTGGAGGTTCTGGTGATTAGTACTCAGAATGGAAATGGAATGCAGTTTCCAAAGGGAGGTTGGGAGACTAATGAATCCATGGAGCAAGCTGCTTTAAGGGAGACCATTGAGGAAGCTGGGGTTATAGGAAATATTGAAAGTAAATTGGGTAAATGGTCTTATAAGAGCAAACGCCAAGATGTTGTACACGAGGGTTATATGTTTTCTTTGCTTGTCAAGAAGCAATTAGAGAACTGGCCAGAGAAGAACTTTCGACAAAGAAGTTGGATGAGTGTAAGTGAAGCCAAAGAAGTTTGTCCACATATTTGGATGAAGGAGGCTTTGGATGTATTGGTCATAAACACGAGAACTGTTCAAGATTTTAGGACGGATAATTCAGAATCATTGAACAAAATTCAAGTATGTTACACTCATAACACCATGTAA 648 0.3812 MGILFSRNLAIKCFLPFLFSNRVSGNLFPKELQNMMCMVSRTGRDLQRYDVDGCRQIVGCIPYRYRRKEEHEKELEVLVISTQNGNGMQFPKGGWETNESMEQAALRETIEEAGVIGNIESKLGKWSYKSKRQDVVHEGYMFSLLVKKQLENWPEKNFRQRSWMSVSEAKEVCPHIWMKEALDVLVINTRTVQDFRTDNSESLNKIQVCYTHNTM 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06460 215 ProSitePatterns Nudix box signature. 93 114 IPR020084 GO:0016787
Vivi5g06460 215 CDD Nudix_Hydrolase_9 58 179 IPR047198 GO:0016462
Vivi5g06460 215 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 38 188 - -
Vivi5g06460 215 FunFam Nudix hydrolase 17, mitochondrial 39 188 - -
Vivi5g06460 215 Pfam NUDIX domain 73 170 IPR000086 -
Vivi5g06460 215 SUPERFAMILY Nudix 38 185 IPR015797 -
Vivi5g06460 215 PANTHER DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE 39 187 - -
Vivi5g06460 215 ProSiteProfiles Nudix hydrolase domain profile. 53 186 IPR000086 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06460 Vivi-Chr5 171263567 171265117 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06460 K07766 - gmx:100800531 285.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g06460 5 171263567 171265117 Vivi5g06460 5 171263567 171265117 ECH
Vivi5g06460 5 171263567 171265117 Vivi4g00421 4 9001757 9004346 PCT