Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0181 ATGAAAATCTTTTTCAGGTTTTGGGATAACTGTCTTATTACAATTCTCATCTCAAAACTTTCCTTCATTTTCTCACCCATTTTCCTTCCAAATACTCCTGGGAAATTGAAAAACCAAAAGATGGTTTCTATTGTTTCCCGGACTGGAAGGCAGTTCCAGCGTTACAATCAAGGTTGCCGCCAAGTCGTAGGATGCATTCCATACAGATACAAAACAGACAAAGAATCAGATGGAGCCCCCATTGAAGAATTAGAAGTCCTTGTGGTCAGTTCACAAAAGGGCAAAGGGATGCTATTCCCAAAGGGAGGTTGGGAAATTGATGAATCAATAGAAGAGGCTGCAACAAGAGAGACCCTAGAAGAAGCCGGTGTGCTTGGAAATGTGGGGTGTAAATTGGGAAAATGGAGCTTCAAGAGCAAGAGCCGGGGCACATTTGATGAAGGATACATGTTTCCTTTGCTTGTGAAGGAGCAACTAGACTTCTGGCCTGAGAAAAATGTTAGGCAAAGAAGATGGATGGCTGCATCAGAAGCCAGAGAAGTGTGCCAGCATTGGTGGATGAAGGAAGCCCTGGATATACTAATTCAGAGACTCATGAATGGTCAAGAAAAGGGGGTTGAAGATGAAACTCCAAGCCCATAG 642 0.433 MKIFFRFWDNCLITILISKLSFIFSPIFLPNTPGKLKNQKMVSIVSRTGRQFQRYNQGCRQVVGCIPYRYKTDKESDGAPIEELEVLVVSSQKGKGMLFPKGGWEIDESIEEAATRETLEEAGVLGNVGCKLGKWSFKSKSRGTFDEGYMFPLLVKEQLDFWPEKNVRQRRWMAASEAREVCQHWWMKEALDILIQRLMNGQEKGVEDETPSP* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0181 213 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 45 197 - -
Vvi17g0181 213 SUPERFAMILY Nudix 49 197 IPR015797 -
Vvi17g0181 213 FunFam Nudix hydrolase 17, mitochondrial 45 197 - -
Vvi17g0181 213 ProSitePatterns Nudix box signature. 102 123 IPR020084 GO:0016787
Vvi17g0181 213 CDD Nudix_Hydrolase_9 61 188 IPR047198 GO:0016462
Vvi17g0181 213 ProSiteProfiles Nudix hydrolase domain profile. 58 195 IPR000086 -
Vvi17g0181 213 PANTHER DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE 45 199 - -
Vvi17g0181 213 Pfam NUDIX domain 85 181 IPR000086 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0181 Vvi-Chr17 1666578 1668037 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0181 K07766 - vvi:100242429 437.958