Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu1g0921 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g0922 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g0923 . . . . . . . . . . . . . . . . . . . . . . . . . . Lal8g1313 . . . . Lan3g1635 . Lasa3g00606 . . . . . . . . . . Phac1g01204 Phco2g00981 . Psa3g3716 . . . . Spst1g00285 . . . . . . . . . . .
Pvu1g0924 . . . . . . . . . . Amo06g2368 . . . . . . . . . . . . . . . Lal8g1317 . . . . . . Lasa3g00608 . . . . . Mal3g0913 . . . . . Phco2g01384 . . . . . . Spst1g00288 . . . . . . . . . . .
Pvu1g0925 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g0926 . . . . . . . . . . Amo06g2367 . . . . . . . . . . . . . . . Lal8g1318 . . . . . . Lasa3g00617 . . . . . Mal3g0891 . . . . . Phco2g00985 . . . . . . Spst1g00289 . . . . . . . . . . .
Pvu1g0927 . . . . Aev06g1949 . . . . . Amo06g2366 . . . . . . . . . . . . . . . Lal8g1320 . . . . . . Lasa3g00618 . . . . . Mal3g0890 . . . . . Phco2g00986 . . Pste5g00514 . . . Spst1g00290 . . . . . . . . . . .
Pvu1g0928 . . . . . . . . . . Amo06g2363 . . . . . . . . . . . . . . . . . . . . . . Lasa3g00622 . . . . . Mal3g0883 . . . . . . . . Pste5g00519 . . . Spst1g00291 . . . . . . . . . . .
Pvu1g0929 . . . . . . . . . . Amo06g2362 . . . . . . . . . . . . . . . Lal8g1322 . . Lan10g1108 . Lan3g0835 . . . . . . . Mal3g0882 . . . . . Phco2g00990 . . Pste5g00523 . . . Spst1g00292 . . . . . . . . . . .
Pvu1g0930 . . . . . . . . . . Amo06g2361 . . . . . . . . . . . . . . . . . Lal10g0170 . . . . Lasa3g00623 . . . . . Mal3g0881 . . . . Phac1g01214 Phco2g00993 . Psa3g3849 Pste5g00537 . . . Spst1g00293 . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Mal Mal3g0883 Chr3 34989551 34998478 -
Pvu Pvu1g0921 Chr1 16260942 16263215 +
Pvu Pvu1g0922 Chr1 16263483 16263918 +
Pvu Pvu1g0923 Chr1 16284555 16286510 +
Lal Lal8g1313 Chr8 16190939 16191847 +
Lan Lan3g1635 Chr3 28313807 28315660 -
Lasa Lasa3g00606 Chr3 52961207 52962031 +
Phac Phac1g01204 Chr1 12435230 12439412 +
Phco Phco2g00981 Chr2 12722480 12723415 +
Psa Psa3g3716 Chr3 321630308 321632028 +
Spst Spst1g00285 Chr1 4020621 4021559 +
Pvu Pvu1g0924 Chr1 16326311 16330437 +
Amo Amo06g2368 Chr06 83919200 83923146 -
Lal Lal8g1317 Chr8 16284151 16287924 +
Lasa Lasa3g00608 Chr3 54923198 54925881 +
Mal Mal3g0913 Chr3 36359751 36363848 -
Phco Phco2g01384 Chr2 42864575 42882946 -
Spst Spst1g00288 Chr1 4040427 4043867 +
Pvu Pvu1g0925 Chr1 16363640 16364412 +
Pvu Pvu1g0926 Chr1 16402292 16406784 +
Amo Amo06g2367 Chr06 83839931 83842391 -
Lal Lal8g1318 Chr8 16298428 16301355 +
Lasa Lasa3g00617 Chr3 58037329 58039759 +
Mal Mal3g0891 Chr3 35184091 35186574 +
Phco Phco2g00985 Chr2 12829507 12831555 +
Spst Spst1g00289 Chr1 4045343 4047836 +
Pvu Pvu1g0927 Chr1 16513594 16522019 -
Aev Aev06g1949 Chr06 16717549 16725474 +
Amo Amo06g2366 Chr06 83831174 83839595 +
Lal Lal8g1320 Chr8 16330495 16339092 -
Lasa Lasa3g00618 Chr3 58098657 58106277 -
Mal Mal3g0890 Chr3 35168896 35181114 +
Phco Phco2g00986 Chr2 12868973 12878527 -
Pste Pste5g00514 Chr5 3401260 3409702 -
Spst Spst1g00290 Chr1 4057736 4065340 -
Pvu Pvu1g0928 Chr1 16570397 16576117 +
Amo Amo06g2363 Chr06 83767374 83778487 -
Lasa Lasa3g00622 Chr3 58717721 58727877 -
Mal Mal3g0883 Chr3 34989551 34998478 -
Pste Pste5g00519 Chr5 3422002 3430114 +
Spst Spst1g00291 Chr1 4075150 4089559 +
Pvu Pvu1g0929 Chr1 16607875 16610151 +
Amo Amo06g2362 Chr06 83760590 83764060 -
Lal Lal8g1322 Chr8 16427160 16431272 +
Lan Lan10g1108 Chr10 16294804 16300317 +
Lan Lan3g0835 Chr3 15860397 15864982 +
Mal Mal3g0882 Chr3 34983803 34986287 -
Phco Phco2g00990 Chr2 12977330 12979220 +
Pste Pste5g00523 Chr5 3438436 3441048 +
Spst Spst1g00292 Chr1 4093336 4095327 +
Pvu Pvu1g0930 Chr1 16669114 16670619 -
Amo Amo06g2361 Chr06 83740030 83741476 +
Lal Lal10g0170 Chr10 1961773 1963809 -
Lasa Lasa3g00623 Chr3 58879207 58879997 -
Mal Mal3g0881 Chr3 34939012 34940116 +
Phac Phac1g01214 Chr1 12643024 12644800 -
Phco Phco2g00993 Chr2 13056599 13057510 -
Psa Psa3g3849 Chr3 350145414 350147001 -
Pste Pste5g00537 Chr5 3507916 3509588 -
Spst Spst1g00293 Chr1 4098635 4100436 -
Lan Lan10g1108 Chr10 16294804 16300317 +
Amo Amo06g2362 Chr06 83760590 83764060 -
Phco Phco2g01384 Chr2 42864575 42882946 -
Lasa Lasa3g00622 Chr3 58717721 58727877 -
Lan Lan3g0835 Chr3 15860397 15864982 +