Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g0891 ATGAAACCCGCAACATCAACATTAGAATTAGCACAAAGAATAAGCAGAACAATAATCACAACCTCAAAAAACCACAAACACAAACATCATCATTACTCATGGAACTCACAAATCGAACAAAACCTTCACAACAACCTCACACACAATCTAACACCATCTCTTGTTTCTTCAATCATTGACCCTTTTCTCCTCAATCACCAGTCCCTCGCTTTAGGCTTCTTCAATTGGGTTTCTCAACAACCCAGTTTCACACACAATGCTTCAACTTTTCACTCCATTCTCAAATCACTCTCCTTAACACAAAACCATTCACATTCACACTTTCTTATCACACTTGTTAAAAAAGCTCAAATTTTGAATTTTCCAATACACCCTTCAGTTTTTTGTGCTGTTATAACAACCCACATTGCGCGAAACAACTTAAATCAAGCATTTTTAATCTTCAACGATGTCGTTGAATTAATCGCTCAAATGGGTGCCCCTACATGTAATTCTTTATTAGCTGCACTTGCTGATAAGAATATTGATAATGCGCGTAAGGTGTTTGATGAAATGATTGTTAGGGGTGTACGGTTTAGTACGTTGGGTTTCGGTGTTTTTGTTTGGTGGGTTTGTAAGGAGGGTGATATGGGGAGAGTTTTGGGGTTAGTGGATGAGGTTGGTGAATGTGGTTTTGGGGTTGATGGTTCGGTTGTGGCGGTTATGATTGTTAATGGGTTGTGTGAGGTTGGGAAGGTTGATGAGGCGATGGTGATGTTGGGTGAATTGAGGGAGAGAGGGTGGAAGCCGGATTTTATGGCTTATTGGGTTGTTGCTACGGAGTTTAGGAAGATGGGGAATGTGGTTGATGAAATTAAGGTTTTGAAGGTGAAGAGGAAGTTTGGTGTGGCTCCTAGGAGTGGGGATTATAAAGGGTTTATATTTGAGTTGGTTTCAGAGAAGCGAATTTGGGAAGCTAAGATGATTGGGGAGGTTATTGTTGGTGGTAATTTTGTTGTTGAGGATGATGTTTTTAATGTGTTGATTGAATCTGTTTCAGATGTTGATCCTGTTGGGGCGATTGTGTTTTTTAATTATGTTGTTGAGAAAGAGAGGTTTTTGAGTGTTTCGAGTTTGAATAGATTGAGTAGGAATTTGTGTAGGGTGGGTAAGGTGGATGAATTGCTGGAGGTATTTCGTGTTTTGGATTGTAAGAATTACTTCAAGGATTTGGAGGGTTACAATGTGATGGTGTCATGGTTGTGTGAGGCTGGGAGAGTTAAAGAAGGCTATGCTGTTCTTCAAGAGATGAAGAAGAAAGGGTTAAATCCCGATGTCTCGTCTTATAATTATGTGATGGAAGCGTGTTGTAAGGAGGATTTGCTTCGCCCTGCGAGGAAGCTTTGGGATGAGATGTTTGCGAGTGGATGTTGTGGGAACTTGAAAACATATAATATTTTGATTCAGAAGTTTTTGGAGGAGGGGCTAATTGAAGAGGCTCAGACGTTGTTTAATCGCATGTTGGACAAGGGAGTTGAACCCGATAGTGCGAGTTACACTTTTCTCTTACAAGGGCTCTGCCAAGAAGATAAACTTGAAAAAGCTTTTGAGCTCTTTAGCAAGTCTGTCAAACAGGATATCACCATTGCAAGAGACATTTTGGGCTCGTTTATATCATCACTCTGCAAGAAAGGACATATGACAGATGCTTCCAAATTACTCTGCAGTCTAAGTCATGATATAGGACGCCCAGAATCCCACGTGGCTTTGTTGAAATGTTTGGCAGATGCAAGAGAGATTCAAACTGCTATTGAGCATTTGAGGTGGGTTGAGGAGAAGTCACCTTCAATGCTACAAGATATATGTACCGGTCTTTTAGCTTCCCTTTCTGTTGCTAAATGCCCGGAACCGATATTACAGTTTCTTCAAAGAATGCAAGGTTGA 1923 0.4051 MKPATSTLELAQRISRTIITTSKNHKHKHHHYSWNSQIEQNLHNNLTHNLTPSLVSSIIDPFLLNHQSLALGFFNWVSQQPSFTHNASTFHSILKSLSLTQNHSHSHFLITLVKKAQILNFPIHPSVFCAVITTHIARNNLNQAFLIFNDVVELIAQMGAPTCNSLLAALADKNIDNARKVFDEMIVRGVRFSTLGFGVFVWWVCKEGDMGRVLGLVDEVGECGFGVDGSVVAVMIVNGLCEVGKVDEAMVMLGELRERGWKPDFMAYWVVATEFRKMGNVVDEIKVLKVKRKFGVAPRSGDYKGFIFELVSEKRIWEAKMIGEVIVGGNFVVEDDVFNVLIESVSDVDPVGAIVFFNYVVEKERFLSVSSLNRLSRNLCRVGKVDELLEVFRVLDCKNYFKDLEGYNVMVSWLCEAGRVKEGYAVLQEMKKKGLNPDVSSYNYVMEACCKEDLLRPARKLWDEMFASGCCGNLKTYNILIQKFLEEGLIEEAQTLFNRMLDKGVEPDSASYTFLLQGLCQEDKLEKAFELFSKSVKQDITIARDILGSFISSLCKKGHMTDASKLLCSLSHDIGRPESHVALLKCLADAREIQTAIEHLRWVEEKSPSMLQDICTGLLASLSVAKCPEPILQFLQRMQG* 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g0891 640 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 229 263 IPR002885 -
Mal3g0891 640 Pfam PPR repeat 236 260 IPR002885 -
Mal3g0891 640 Pfam PPR repeat 164 190 IPR002885 -
Mal3g0891 640 Pfam PPR repeat 549 568 IPR002885 -
Mal3g0891 640 TIGRFAM PPR: pentatricopeptide repeat domain 511 540 IPR002885 -
Mal3g0891 640 TIGRFAM PPR: pentatricopeptide repeat domain 235 264 IPR002885 -
Mal3g0891 640 TIGRFAM PPR: pentatricopeptide repeat domain 407 439 IPR002885 -
Mal3g0891 640 TIGRFAM PPR: pentatricopeptide repeat domain 476 509 IPR002885 -
Mal3g0891 640 TIGRFAM PPR: pentatricopeptide repeat domain 441 473 IPR002885 -
Mal3g0891 640 Gene3D Tetratricopeptide repeat domain 204 326 IPR011990 GO:0005515
Mal3g0891 640 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 508 542 IPR002885 -
Mal3g0891 640 Gene3D Tetratricopeptide repeat domain 15 186 IPR011990 GO:0005515
Mal3g0891 640 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 473 507 IPR002885 -
Mal3g0891 640 Gene3D Tetratricopeptide repeat domain 456 582 IPR011990 GO:0005515
Mal3g0891 640 Gene3D Tetratricopeptide repeat domain 327 455 IPR011990 GO:0005515
Mal3g0891 640 Pfam PPR repeat family 405 451 IPR002885 -
Mal3g0891 640 Pfam PPR repeat family 474 521 IPR002885 -
Mal3g0891 640 SUPERFAMILY HCP-like 471 609 - -
Mal3g0891 640 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 438 472 IPR002885 -
Mal3g0891 640 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 403 437 IPR002885 -
Mal3g0891 640 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 5 639 - -
Mal3g0891 640 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 5 639 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g0891 178 567 Glycosyltransferase AT1G05670 24.051 1.44e-30 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g0891 - - mtr:MTR_7g027940 1158.67