Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00288 ATGGATGATGAATATGCTAAGCTTATAAGAAGGATGAATCCGCCAAGGGTTGTGATCGACAACAATGCCTGTGAAAACGCCACTGTTATTCAGGTTGACAGTGTCAACAAACATGGGATTCTCCTGGATGTTGTCCAAGTTATTTCAGATATGAACCTTGTAATAACAAAGGCCTACATCTCCTCTGATGGGGTATGGTTCATGGATGTGTTTAATGTGATTGATCACAATGGAAACAAAATCAGAGATAAGGAAGTCATTGATTATATTCAGAGGAGAATTGAAAACAATCCGAGCTTTGCACCCTCACTGAGAGAGTCTGTTGGAGTTGTACCTACTGAAGAACACACTGTAATTGAACTCACTGGGACGGACCGTCCTGGGTTACTATCTGAAATCTGTGCAGTTCTCACGGACCTTCACTGTAATGTGGTGACTGCTGAGATATGGACACACAATACTAGAGCTGCAGCTGTAGTTCATGTGACAGATGATTCCAGTGGCTGTGCCATCAAGGATCCGTCTCGCCTCTCTACAATAAGGGATTTGCTTTCTAATGTTCTTAGGGGGAGTAATGATCCAAAGACAGCAAGGACAACACTTTCACCTCCTGGAGTTACAAATAGGGATAGAAGATTGCATCAGATTATGTTTGCTGATAGGGACTATGAGAGGATTGAAAGAGCAGGACGAGGGGGACTCAGAGATAGAGATAAACGTCCTCTCCCTCATGTAACCGTTGTAGATTGTGTTGAGAAGGATTACACTGTGGTTACCATGAGAGCAAAAGATCGACCGAAGTTATTGTTTGACATTGTTTGCACTTTAACTGACATGCAGTATGTAGTATTTCATGGGGTTGTCAAGACATCACGGACAGAAGCTTTTCAGGAGTTTTATATTCGGCATGTTGATGGCTTTCCCATTAGTTTAGAGGCTGAGCGCGAACGATTAGTGCAGTGTCTTGAAGCAGCAATTGAAAGGCGAGCATCTGAGGGAATGGAGCTTGAGTTGTGCACAGAAGATCGTGTAGGACTCCTCTCAGATATCACAAGAATATTTCGAGAGAACAGTTTGTGTATCAAAAGAGCAGAAATATCAACAGAAGAAGGAAAGGCAAGAGATACTTTTTATGTCACAGATGTTACTGGTAACCCAGTTGACCCCAAGATTATAGATTCAATTCGCAGACAGATTGGTGACAAAGTACTGAACGTAAAACATAACTCTAGTCTCTCACCAAAGGCCCCTCAACCCACAACAATTGGATTTCTCTTAGGAAACTTTTTCAAAGCTCGATCTTTTCAGAATTTTAAGCTGATCAGATCTTATTCTTGA 1338 0.4185 MDDEYAKLIRRMNPPRVVIDNNACENATVIQVDSVNKHGILLDVVQVISDMNLVITKAYISSDGVWFMDVFNVIDHNGNKIRDKEVIDYIQRRIENNPSFAPSLRESVGVVPTEEHTVIELTGTDRPGLLSEICAVLTDLHCNVVTAEIWTHNTRAAAVVHVTDDSSGCAIKDPSRLSTIRDLLSNVLRGSNDPKTARTTLSPPGVTNRDRRLHQIMFADRDYERIERAGRGGLRDRDKRPLPHVTVVDCVEKDYTVVTMRAKDRPKLLFDIVCTLTDMQYVVFHGVVKTSRTEAFQEFYIRHVDGFPISLEAERERLVQCLEAAIERRASEGMELELCTEDRVGLLSDITRIFRENSLCIKRAEISTEEGKARDTFYVTDVTGNPVDPKIIDSIRRQIGDKVLNVKHNSSLSPKAPQPTTIGFLLGNFFKARSFQNFKLIRSYS 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00288 445 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 2 407 IPR040217 -
Spst1g00288 445 ProSiteProfiles ACT domain profile. 335 414 IPR002912 -
Spst1g00288 445 CDD ACT_ACR_4 333 404 - -
Spst1g00288 445 Gene3D - 112 189 - -
Spst1g00288 445 ProSiteProfiles ACT domain profile. 29 108 IPR002912 -
Spst1g00288 445 SUPERFAMILY ACT-like 24 93 IPR045865 -
Spst1g00288 445 SUPERFAMILY ACT-like 112 188 IPR045865 -
Spst1g00288 445 CDD ACT_ACR_3 255 329 - -
Spst1g00288 445 ProSiteProfiles ACT domain profile. 118 204 IPR002912 -
Spst1g00288 445 Pfam ACT domain 339 397 IPR002912 -
Spst1g00288 445 Pfam ACT domain 117 166 IPR002912 -
Spst1g00288 445 Pfam ACT domain 28 79 IPR002912 -
Spst1g00288 445 CDD ACT_ACR_2 117 190 - -
Spst1g00288 445 SUPERFAMILY ACT-like 331 401 IPR045865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00288 Spst-Chr1 4040427 4043867 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00288 - - gmx:100818506 870.537