Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2367 ATGAATCGGGAGGCGGGAGACCTGGCAGTTCGAATAAGCAGAGCTCTGATCTCAGCCTCCTCACCCACCCGCCACTCATGGACTCCCTCCCTGGAGCACACCCTCCATGCTCTCCGCTGCCGCCACCACCTCTCGCCTCCTCTCGTCTCCGCTGTCATCAACCCCTTCCTTCTCCGCCACCACTCCCTCGCATTGGGCTTCTTCAATTGGGCCACTAACCAGCCCAACTTCGCCCACACTCCCTCCACCTTCCACTCTCTCCTCTCCTCCCTCTCCAACTCCCACTCCCAACACCACCAAAACTCCGTTCTTTCGCTTCTCAACCAAGCCAAAGCCCTCAACTTCCCCCTCCATAGCTCCATTCTCCGCTCCGCCATTTCCTCTCTTCTTGCAACGAACAAGATTCATAATGCATTCTCTATGTTTAGGGAATTTTCTACTCTTGCCAACGAATTGGGTGGCGCCACATGTAATAGGTTACTGGCTGCACTTGCTTCTGCTGGGTACTTGGACAGTGCGTACAAGGTGTTTGATGAAATGACTGTTAGGGGTGCCCCTTTGAGTACCATGGGTTTTGGGGTGTTTGTGTGGAGGGTTTGTGAAGAGGGTTGTTTGGATAGAGTTTTAGCTGTTTTGGATAAGGTTAAGGATTGCTGTTTGGGGATTAATGGGTCGGTTGTGGCAGTTTTGATTGTTCATGGGTTGTGTCGTGCCGGCAGGGTGTCCGAGGCCTTAGGGATGTTAGGTGAGCTGAGGGGCAAGGGATGGAAACCTGACTTCATTGCTTATTGGGTTGTTGCCTCGGCACTGCGAAGAATGCGAGATGTGGCTGAGGAAGTGAAGGTTTTGAAGATGAAGAGGAAGTTAGGGGTGGCACCGAGGATTGGTGATTACAAGGACTTGATACTTGAATTGGTTTCTGAGGGGCGGATTAATGTGGTGAAAGAACTCGGGGAGATCATTGTTGGTGCTAATTTTCCCATTGATGATGATCTTCTCAATGCCTTAATTGGATCAGTTTCGAGTATTGATCCTGGAGCTACAATTATCTTTTTTGAGTTCATGATTCGTAAAGGGAGGTTTCCTACCATTTTGACTATTAGCAATTTGAGTAGAAATCTGTTTAGGCATGGGAAGGTAGATGAGATGTTAGAGGTGTTCCGAGTTCTGGATTCTCATAACTACTTCAAAGATGTGGAGGGTTACAATGTGATGGTGTCGTTCTTGTGCGAAGCCGGAAGAGTGAAAGAGGGCTATGCTGTTCTCCAAAAGATGAAGAAGAAACGGATCATTCCTAATGTGTCATCTTATAATTATGTGATGGAAGCGTGTTGCAAGGAGGATCTGCTGCGCCCAGCGAGGAAGCTTTGGGATGAGATGTTTTCATGTGGATGTTCTGGGAACTTGAAGACCTACAATATTCTGATAAAGAAGTTCTCTGACGTGGGACAAACTGAAGAGGGTTACAAGCTCTTTCAGCACATGTTGGACAAAGGGTTAACACCTGATCACACAAGTTACACCTCTCTTCTTGAAGGGCTTTGTTATGAGGACAAACTTGAAGCAGCTTTTGAGCTCTATAACAAGCATGTAAAACAGGACATTATCCTTGCAAGAGATATATTAAGCTCATTTGTATCATCACTATGCAAGAAAGGTTATCTTATGGATGCTTCCAAACTACTTTGCAGCCTCAATAATGATATAGGAAACACAGAGGCCCATGTAGTTTTGCTGAAATGTTCGGCTGAGGCAAAAGAAATTCCAATAGCCATTGAGCACCTGAAGTGGATTCAGCAAAAGTCACCTTTAATGTTGCAAGATATATGTGCTGGACTTTTAGCTTTTATTTCTTCTGCTACATTTCCGGAGCCAATATTACAGTTACTGCAAAAAATACAAGACTTCAATTTCCCAAATAAAGGACATCTTAAAGGATGTGTACCATAG 1950 0.4585 MNREAGDLAVRISRALISASSPTRHSWTPSLEHTLHALRCRHHLSPPLVSAVINPFLLRHHSLALGFFNWATNQPNFAHTPSTFHSLLSSLSNSHSQHHQNSVLSLLNQAKALNFPLHSSILRSAISSLLATNKIHNAFSMFREFSTLANELGGATCNRLLAALASAGYLDSAYKVFDEMTVRGAPLSTMGFGVFVWRVCEEGCLDRVLAVLDKVKDCCLGINGSVVAVLIVHGLCRAGRVSEALGMLGELRGKGWKPDFIAYWVVASALRRMRDVAEEVKVLKMKRKLGVAPRIGDYKDLILELVSEGRINVVKELGEIIVGANFPIDDDLLNALIGSVSSIDPGATIIFFEFMIRKGRFPTILTISNLSRNLFRHGKVDEMLEVFRVLDSHNYFKDVEGYNVMVSFLCEAGRVKEGYAVLQKMKKKRIIPNVSSYNYVMEACCKEDLLRPARKLWDEMFSCGCSGNLKTYNILIKKFSDVGQTEEGYKLFQHMLDKGLTPDHTSYTSLLEGLCYEDKLEAAFELYNKHVKQDIILARDILSSFVSSLCKKGYLMDASKLLCSLNNDIGNTEAHVVLLKCSAEAKEIPIAIEHLKWIQQKSPLMLQDICAGLLAFISSATFPEPILQLLQKIQDFNFPNKGHLKGCVP* 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2367 649 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 433 467 IPR002885 -
Amo06g2367 649 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 398 432 IPR002885 -
Amo06g2367 649 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 153 187 IPR002885 -
Amo06g2367 649 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 468 502 IPR002885 -
Amo06g2367 649 TIGRFAM PPR: pentatricopeptide repeat domain 231 259 IPR002885 -
Amo06g2367 649 TIGRFAM PPR: pentatricopeptide repeat domain 436 468 IPR002885 -
Amo06g2367 649 TIGRFAM PPR: pentatricopeptide repeat domain 402 434 IPR002885 -
Amo06g2367 649 TIGRFAM PPR: pentatricopeptide repeat domain 471 503 IPR002885 -
Amo06g2367 649 TIGRFAM PPR: pentatricopeptide repeat domain 156 184 IPR002885 -
Amo06g2367 649 Gene3D Tetratricopeptide repeat domain 449 603 IPR011990 GO:0005515
Amo06g2367 649 Gene3D Tetratricopeptide repeat domain 305 448 IPR011990 GO:0005515
Amo06g2367 649 Gene3D Tetratricopeptide repeat domain 58 228 IPR011990 GO:0005515
Amo06g2367 649 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 224 258 IPR002885 -
Amo06g2367 649 Pfam PPR repeat family 397 446 IPR002885 -
Amo06g2367 649 Pfam PPR repeat family 471 515 IPR002885 -
Amo06g2367 649 Gene3D Tetratricopeptide repeat domain 229 289 IPR011990 GO:0005515
Amo06g2367 649 Pfam PPR repeat 156 184 IPR002885 -
Amo06g2367 649 Pfam PPR repeat 231 255 IPR002885 -
Amo06g2367 649 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 503 537 IPR002885 -
Amo06g2367 649 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 4 636 - -
Amo06g2367 649 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 4 636 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2367 Amo-Chr6 83839931 83842391 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2367 61 562 Glycosyltransferase AT1G05670 24.118 3.77e-29 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2367 - - gmx:100813184 859.366