Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00291 ATGGACAGCCGAAACGTCGTCGTTTGCGACAACGGAACAGGGTATGTGAAGTGTGGTTTTTCTGGGGAGAATTTCCCCACATCGGTTTTTCCTTGTGTAGTAGGAAGGCCGATGCTCCGTTATGAAGAATCACTCACCGAACAGGAGCTTAAGGATATTGTTGTTGGCGAAAGCTGTGCAGACTTGATGCATCAGCTTGATATATCTTATCCTGTGAACAACGGCATAGTGCAAAATTGGGATGATATGTGCCATGTTTGGGATCATGCATTTTACAATGAATTGAAGATTAACCCTCCGGACTGTAAGATTTTACTCACCGATCCGCCGCTTAATCCTTCCAAGAATCGTGAAAAAATGGTTGAGACGATGTTTGAGAAGTACAATTTTGCTGGAGTGTTTATCCAAATCCAAGCTGTTCTAACATTATATGCTCAAGGTTTGTTGACTGGATTAGTCATTGATGCGGGTGATGGTGTCACTCACGTGGTTCCAGTTGTTGATGGCTATTCTTTCCCTCATCTAACTAAACGAATGAATGTTGCTGGTCGACATATAACTTCTTATCTAGTTGATTTGCTTTCAAGGCGGGGGTATGCATTAAATAGGACTGCTGATTTTGAGACTGTTAGGGAAATCAAAGAGAAGCTATGCTATATAAGTTACGACTACAAGAGGGAATACCAGTTGGGGCTTGAGACCACCATCCTTGTTAAGAATTATACTCTTCCGGATGGAAGGGTCATTAAAGTAGGCACGGAAAGATTCCAGGCTCCTGAGGCTCTTTTCACTCCGGAACTTATAGATGTAGAAGGCGATGGAATGGCTGACATGGTTTTTCGCTGTATCCAGGAGATGGATATTGACAATCGGATGATGCTATATCAACACATAGTTTTAAGTGGAGGGAGCACCATGTATCCGGGATTACCAAGCCGGTTGGAAAAAGAAATACTTGATCGTTATCTTGATGTTGTCCTGAAGGGGAACAGAGATGGATTGAAGAAATTACGACTAAGAATAGAGGATCCACCGCGTAGGAAGCACATGGTGTACCTTGGAGGTGCAGTCCTCGCAGGAATAATGAAGGATGCACCAGAGTTTTGGATTAACAGGGAAGATTATCTAGAAGAAGGACTTGCTTGCCTAAGCAAGTGTGGCCAGGCATGA 1170 0.4333 MDSRNVVVCDNGTGYVKCGFSGENFPTSVFPCVVGRPMLRYEESLTEQELKDIVVGESCADLMHQLDISYPVNNGIVQNWDDMCHVWDHAFYNELKINPPDCKILLTDPPLNPSKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDAGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYALNRTADFETVREIKEKLCYISYDYKREYQLGLETTILVKNYTLPDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRLEKEILDRYLDVVLKGNRDGLKKLRLRIEDPPRRKHMVYLGGAVLAGIMKDAPEFWINREDYLEEGLACLSKCGQA 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00291 389 FunFam Actin, alpha skeletal muscle 1 162 - -
Spst1g00291 389 PRINTS Actin signature 237 253 IPR004000 -
Spst1g00291 389 PRINTS Actin signature 25 34 IPR004000 -
Spst1g00291 389 PRINTS Actin signature 116 129 IPR004000 -
Spst1g00291 389 PRINTS Actin signature 62 84 IPR004000 -
Spst1g00291 389 PRINTS Actin signature 141 160 IPR004000 -
Spst1g00291 389 SUPERFAMILY Actin-like ATPase domain 2 154 IPR043129 -
Spst1g00291 389 CDD NBD_sugar-kinase_HSP70_actin 7 190 - -
Spst1g00291 389 SMART actin_3 4 387 IPR004000 -
Spst1g00291 389 Gene3D - 7 379 - -
Spst1g00291 389 FunFam Actin-related protein 2 181 272 - -
Spst1g00291 389 Gene3D Actin; Chain A, domain 4 181 272 - -
Spst1g00291 389 PANTHER ACTIN 7 379 IPR004000 -
Spst1g00291 389 Gene3D - 139 350 - -
Spst1g00291 389 SUPERFAMILY Actin-like ATPase domain 147 383 IPR043129 -
Spst1g00291 389 Pfam Actin 2 383 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00291 Spst-Chr1 4075150 4089559 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00291 2 386 Miscellaneous Gene Families AT2G42100 44.041 1.78e-121 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00291 K17260 - gmx:100803980 786.949