Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00289 ATGAGGGGTGGAGCAGCAGCATTTGATTTGGCAATTGGCTTAAGCAAGGCTGTGATCTCAGCCTCAAACAAGAAGGGAAGGCAATGTTTGTGGGGTTCTCAAGTGGAGGAGACACTCCACAGGTTGGGATGGCGCCAATGCCTGACCCCATCACTGGTGGCCAATGTCATAGACCCTTTCCTCCTCGCTCACCATTCCCTTGCTCTTGGCTTCTTTAATTGGGCCTCTCAGCAGCCTGGCTTTGCCCACACACCCTTCACCTTCCACTCACTCCTCAAATCACTCTCACACACCAACCACTTCACTGCCATTCATTCACTCCTCAAACAAGCCAAGGCCCTCAACTTTCCCATCCATCCTTCCCTTTGGAGCTCCATTATAGCATCCCATGTTGCCCACAACCGTGCTCGGCAAGCCTTTTCGCTCTTTGGTAGTTTTGCTCCACTTTGTGCTGAAATTGGAGGGCCCACGTGTAACTCGCTCTTGGCTGCCCTTGCCTCTGATGGGTGCTTGGAAAGTGCCTGCCAGGTGTTTGATGAAATGAATAAGAGGGGTGTTGGTTTCAGCACGCTGGGATTCGGGGTGTTTGTTTGGCGGGTTTGTAGAGAGGGTGATTTGGAGAGGGTGGTGAGCTTGATGGGTGAGGTCAGGGAATGTGGTTCTGAAATTAATGGCTCTGTTGTGGCAGTTTTGATTGTGCATGGGTTGTGTCGGGCTTCTAAGGTATCAGAGGCTTCGTGGATGTTGGATGAACTCAGGAGTAGGGGATGGAAACCTGATTTCATGGCTTACTGGGTTGTTGCAGCAGTGTTCCGGTCAATGGGAAATGTGGCTGATGAGGTGAAGGTTTTGAAGATGAAGAGGAAGTTAGGGGTGGCTCCTAGAAGCAGTGATTATAGGGACTTGATACTTGGCTTGCTTTCGGAGAGGCGGATTTGTGAAGGAAAAGAAGTTGGGGAGGTTATAGTTGGTGGTAATTTTCCGGTTGAAGATGATGTTCTCAATGCATTGATAGGATCCGTATCAAGTGTTGATCCTGGTGCGGCGATTATGTTTTTCAATTTCATGGTTGAGAAACAGAGGTTCCCAACTATTTTGACCATCAGTGATTTGAGTAGGAATCTGTGTAGGCATGGCAAAGTCGATGAATTGTTGGAGGTGTTCCACGTTTTGGATTCTCAAAACTACTTCAAAGATGTGGAGGGTTTCAATGTAATGGTGTCATTTTTGTGCAAGGCTGGGAAAGTTAGAGAAGGCTATACTGTTCTGCAGGAGATGAAGAAGAAAGGGTTTCGCCCCAATGTCTCTTCATATAATTACATAATGGAAGCATGTTGTAAGGAGGATCTACTGCGTCCTGCAAGGAAGCTCTGGGATGAGATGTTTTCGAGTGGCTGTTGCGGGAACTTGAAAACATACAACATTCTTATACAAAAATTTTCTGAGGTGGGACAAGCTGAAGAAGCTCAAATGCTCTTTTACCACATGTTAGACAAGGGGGTGGAACCTGATGTTAGAAGTTACAGTTTTCTTCTAGAAGGGCTCTGCCAAGAAGACAAGCTTGAAGCCGCTTTTGAGCTCTACAACAAGTCTGTCAAACAGGACATCATCCATGCAGTAGACATATTGAAGTCGTTTATATTATCACTCTGCAGGAAAGGACATTTTATGGCTGCATCCAAATTACTTTGCAGTCTCAATCATGACATAGGATGTGCAGAATCCCATGTAATTTTGTTGAAAAGTTTGTCAGATGCACAAGAGATTCTAATAGCCATTGAGCACTTGAAGTGGGTTCAGGAAAAATCACCTTCGATACTACAAGATATATGTACTGGACTTTTGGATTCTCTTTCTTCTGCCACACGCCCAGAGCCAATGTTACAATTTCTTCAAAGAATACAAAATGTGTTTGATTTCCCATACTTTGAAGGATCTCGAAGGCAAATGTACATCGACATATTTTTGGAATTCAAGTTAATCATAGCAAGGATAAAGCCTTCAAAGCATAGTAGTAATGTTCCATTTCAGCTTGCTGCTCATATGGTTGTCCTGGGATGA 2061 0.4508 MRGGAAAFDLAIGLSKAVISASNKKGRQCLWGSQVEETLHRLGWRQCLTPSLVANVIDPFLLAHHSLALGFFNWASQQPGFAHTPFTFHSLLKSLSHTNHFTAIHSLLKQAKALNFPIHPSLWSSIIASHVAHNRARQAFSLFGSFAPLCAEIGGPTCNSLLAALASDGCLESACQVFDEMNKRGVGFSTLGFGVFVWRVCREGDLERVVSLMGEVRECGSEINGSVVAVLIVHGLCRASKVSEASWMLDELRSRGWKPDFMAYWVVAAVFRSMGNVADEVKVLKMKRKLGVAPRSSDYRDLILGLLSERRICEGKEVGEVIVGGNFPVEDDVLNALIGSVSSVDPGAAIMFFNFMVEKQRFPTILTISDLSRNLCRHGKVDELLEVFHVLDSQNYFKDVEGFNVMVSFLCKAGKVREGYTVLQEMKKKGFRPNVSSYNYIMEACCKEDLLRPARKLWDEMFSSGCCGNLKTYNILIQKFSEVGQAEEAQMLFYHMLDKGVEPDVRSYSFLLEGLCQEDKLEAAFELYNKSVKQDIIHAVDILKSFILSLCRKGHFMAASKLLCSLNHDIGCAESHVILLKSLSDAQEILIAIEHLKWVQEKSPSILQDICTGLLDSLSSATRPEPMLQFLQRIQNVFDFPYFEGSRRQMYIDIFLEFKLIIARIKPSKHSSNVPFQLAAHMVVLG 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00289 686 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 154 188 IPR002885 -
Spst1g00289 686 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 225 259 IPR002885 -
Spst1g00289 686 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 434 468 IPR002885 -
Spst1g00289 686 Pfam PPR repeat family 470 517 IPR002885 -
Spst1g00289 686 Pfam PPR repeat family 398 447 IPR002885 -
Spst1g00289 686 NCBIfam pentatricopeptide repeat 403 435 IPR002885 -
Spst1g00289 686 NCBIfam pentatricopeptide repeat 472 505 IPR002885 -
Spst1g00289 686 NCBIfam pentatricopeptide repeat 157 186 IPR002885 -
Spst1g00289 686 NCBIfam pentatricopeptide repeat 437 469 IPR002885 -
Spst1g00289 686 Gene3D Tetratricopeptide repeat domain 452 566 IPR011990 GO:0005515
Spst1g00289 686 Gene3D Tetratricopeptide repeat domain 231 320 IPR011990 GO:0005515
Spst1g00289 686 Gene3D Tetratricopeptide repeat domain 326 451 IPR011990 GO:0005515
Spst1g00289 686 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 352 632 - -
Spst1g00289 686 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 504 538 IPR002885 -
Spst1g00289 686 Gene3D Tetratricopeptide repeat domain 63 230 IPR011990 GO:0005515
Spst1g00289 686 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 469 503 IPR002885 -
Spst1g00289 686 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 399 433 IPR002885 -
Spst1g00289 686 Pfam PPR repeat 232 256 IPR002885 -
Spst1g00289 686 Pfam PPR repeat 157 186 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00289 169 577 Glycosyltransferase AT1G05670 20.732 4.79e-29 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00289 - - ccaj:109817244 1128.62